Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0944 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTTATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAACGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCGGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTCCTCCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGATAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGCCACCACCCTCTCCTTATTCTTCATCTGTCACATCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAACCCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCTAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCGATGGTGCCGAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCCCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCACCAGAGCTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.68 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVYSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQPPPSPYSSSVTSKPSSDLIQHDQLEKGNKPDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVADGAEDPVAAAAVTPPVVVGNPSQPSKEQLQASPELSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8866102 8869546 + CcPI632755_09g009440.1 Cco09g0944 187401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0944 693 MobiDBLite consensus disorder prediction 462 486 - -
Cco09g0944 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Cco09g0944 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Cco09g0944 693 MobiDBLite consensus disorder prediction 670 693 - -
Cco09g0944 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Cco09g0944 693 ProSiteProfiles PB1 domain profile. 583 675 IPR053793 -
Cco09g0944 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco09g0944 693 MobiDBLite consensus disorder prediction 550 576 - -
Cco09g0944 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cco09g0944 693 MobiDBLite consensus disorder prediction 99 118 - -
Cco09g0944 693 Gene3D - 287 358 - -
Cco09g0944 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Cco09g0944 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco09g0944 693 FunFam Auxin response factor 123 227 - -
Cco09g0944 693 Gene3D - 579 671 - -
Cco09g0944 693 FunFam Auxin response factor 578 671 - -
Cco09g0944 693 FunFam Auxin response factor 286 357 - -
Cco09g0944 693 Gene3D - 122 227 IPR015300 -
Cco09g0944 693 Pfam AUX/IAA family 559 667 IPR033389 -
Cco09g0944 693 CDD B3_DNA 124 225 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0944 Cco-Chr9:8866102 Cco11g0155 Cco-Chr11:1637219 4.20E-17 dispersed
Cco01g0179 Cco-Chr1:1714161 Cco09g0944 Cco-Chr9:8866102 1.40E-190 transposed
Cco06g2035 Cco-Chr6:30315379 Cco09g0944 Cco-Chr9:8866102 9.80E-160 transposed
Cco07g1226 Cco-Chr7:26146254 Cco09g0944 Cco-Chr9:8866102 1.40E-209 transposed
Cco11g0036 Cco-Chr11:420483 Cco09g0944 Cco-Chr9:8866102 6.40E-180 transposed
Cco07g0136 Cco-Chr7:1424018 Cco09g0944 Cco-Chr9:8866102 6.40E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59944 PF02309 AUX_IAA 8.10E-11 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0944 K14486 - csv:101205805 1241.48