Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0963 | ATGGGTCTAATTTATGGCAATCAATTTGCAGATAGGATTCTGGGGGTGCTATTGTTGGTGGTTAAGGGTCAATTTGCCGATATTGCTATGGGGCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCCAAGAAAAAAACGTTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAACCCCAGGTTCCTGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAAGGCAATTCAAAAGCTTCACAACTTAAAGAGGATGACGATGATGATGATGTGGATGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTGCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGACGATGATGAATCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCATCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTAATGATGAGAATGATGAGGATGTAATTGGTGATGAGGTCAGGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATGATAAAGATGGGGATGAAGATGTTACATCAATTAGCTTTTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAGGGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGCGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATATCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAATGATGAAAATGCGCAGGGAAATGAAGTTAAGGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCTAACAAGATGGAAGCGGTGGCAGAGACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTGGCTGAGCTAGGAGAAGGGCCTACCATATCAAAACCAGCAGACCCTCCCCTTTCTTCCCAGGAGGCCAAAGTTGAGAATCCACCTGAGCCAGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCTGCTGCTGCCGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAAACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCGGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTCGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACAGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCCATGAGGAACCAGATTTTATCAAATGCCGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCATCATCAAACAAATGGAAATGCACAAACGAAGGCAGTGGAGCATACAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCACAGAAGATTGCAGCTGTTGAGTTGATGCATGTGGAGGAAAAAGCAGATGTTGAGGCTACAGAAGACAATGAAATTCAAGAAGATGAGGATGAGGATGAATGGGATGCGAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGATGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAGAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATACCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCGAACTATCGGGATGATTTGTCCACGGATGAGTGGAGACTTGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA | 4164 | 41.98 | MGLIYGNQFADRILGVLLLVVKGQFADIAMGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEPQVPEEKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTAASFGLLEEEGMDDDDESVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALNDENDEDVIGDEVRVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDDKDGDEDVTSISFSGKKKKSAKASKKGGNLFSAALADEENDGDVSISEPNKLDNDGVNEDDINVIAFSGKKKSSKKKSSSTFTALNDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKMEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPEPVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGNAQTKAVEHTEEKIQEKDVAETEILESQKIAAVELMHVEEKADVEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVADKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ | 1387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9069431 | 9082637 | + | CcPI632755_09g009630.1 | Cco09g0963 | 187420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 436 | 457 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
Cco09g0963 | 1387 | FunFam | Eukaryotic translation initiation factor 5B | 789 | 1017 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 673 | 792 | - | - | |
Cco09g0963 | 1387 | Coils | Coil | 1232 | 1252 | - | - | |
Cco09g0963 | 1387 | PRINTS | GTP-binding elongation factor signature | 863 | 873 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | PRINTS | GTP-binding elongation factor signature | 915 | 924 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | PRINTS | GTP-binding elongation factor signature | 799 | 812 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | PRINTS | GTP-binding elongation factor signature | 879 | 890 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 363 | 655 | - | - | |
Cco09g0963 | 1387 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 446 | 1386 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Cco09g0963 | 1387 | FunFam | eukaryotic translation initiation factor 5B | 1018 | 1137 | - | - | |
Cco09g0963 | 1387 | Pfam | Elongation factor Tu domain 4 | 1257 | 1330 | IPR029459 | - | |
Cco09g0963 | 1387 | Coils | Coil | 507 | 574 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 363 | 379 | - | - | |
Cco09g0963 | 1387 | CDD | aeIF5B_II | 1019 | 1129 | - | - | |
Cco09g0963 | 1387 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 795 | 1086 | IPR027417 | - | |
Cco09g0963 | 1387 | CDD | IF2_aeIF5B_IV | 1258 | 1353 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 247 | 261 | - | - | |
Cco09g0963 | 1387 | CDD | IF2_eIF5B | 798 | 1008 | - | - | |
Cco09g0963 | 1387 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1120 | 1249 | IPR036925 | - | |
Cco09g0963 | 1387 | Gene3D | Translation factors | 1018 | 1136 | - | - | |
Cco09g0963 | 1387 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 795 | 1011 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 138 | 185 | - | - | |
Cco09g0963 | 1387 | NCBIfam | small GTP-binding protein domain | 800 | 926 | IPR005225 | GO:0005525(InterPro) | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 639 | 655 | - | - | |
Cco09g0963 | 1387 | FunFam | Eukaryotic translation initiation factor 5B | 1137 | 1243 | - | - | |
Cco09g0963 | 1387 | Pfam | Elongation factor Tu GTP binding domain | 798 | 1007 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 753 | 781 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 143 | 165 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 299 | 313 | - | - | |
Cco09g0963 | 1387 | SUPERFAMILY | Translation proteins | 1254 | 1386 | IPR009000 | - | |
Cco09g0963 | 1387 | Coils | Coil | 444 | 473 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 392 | 407 | - | - | |
Cco09g0963 | 1387 | Pfam | Translation-initiation factor 2 | 1124 | 1236 | IPR023115 | - | |
Cco09g0963 | 1387 | Gene3D | - | 790 | 1017 | IPR027417 | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 478 | 591 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 678 | 698 | - | - | |
Cco09g0963 | 1387 | Gene3D | - | 1137 | 1243 | IPR036925 | - | |
Cco09g0963 | 1387 | Gene3D | Translation factors | 1250 | 1387 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 32 | 110 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 197 | 350 | - | - | |
Cco09g0963 | 1387 | MobiDBLite | consensus disorder prediction | 711 | 729 | - | - | |
Cco09g0963 | 1387 | FunFam | Eukaryotic translation initiation factor 5B | 1250 | 1387 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0963 | Cco-Chr9:9069431 | Cco11g1676 | Cco-Chr11:29598577 | 6.80E-27 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0963 | K03243 | - | csv:101204360 | 2028.06 |