Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0963 ATGGGTCTAATTTATGGCAATCAATTTGCAGATAGGATTCTGGGGGTGCTATTGTTGGTGGTTAAGGGTCAATTTGCCGATATTGCTATGGGGCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCCAAGAAAAAAACGTTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAACCCCAGGTTCCTGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAAGGCAATTCAAAAGCTTCACAACTTAAAGAGGATGACGATGATGATGATGTGGATGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTGCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGACGATGATGAATCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCATCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTAATGATGAGAATGATGAGGATGTAATTGGTGATGAGGTCAGGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATGATAAAGATGGGGATGAAGATGTTACATCAATTAGCTTTTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAGGGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGCGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATATCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAATGATGAAAATGCGCAGGGAAATGAAGTTAAGGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCTAACAAGATGGAAGCGGTGGCAGAGACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTGGCTGAGCTAGGAGAAGGGCCTACCATATCAAAACCAGCAGACCCTCCCCTTTCTTCCCAGGAGGCCAAAGTTGAGAATCCACCTGAGCCAGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCTGCTGCTGCCGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAAACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCGGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTCGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACAGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCCATGAGGAACCAGATTTTATCAAATGCCGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCATCATCAAACAAATGGAAATGCACAAACGAAGGCAGTGGAGCATACAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCACAGAAGATTGCAGCTGTTGAGTTGATGCATGTGGAGGAAAAAGCAGATGTTGAGGCTACAGAAGACAATGAAATTCAAGAAGATGAGGATGAGGATGAATGGGATGCGAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGATGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAGAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATACCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCGAACTATCGGGATGATTTGTCCACGGATGAGTGGAGACTTGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA 4164 41.98 MGLIYGNQFADRILGVLLLVVKGQFADIAMGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEPQVPEEKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTAASFGLLEEEGMDDDDESVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALNDENDEDVIGDEVRVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDDKDGDEDVTSISFSGKKKKSAKASKKGGNLFSAALADEENDGDVSISEPNKLDNDGVNEDDINVIAFSGKKKSSKKKSSSTFTALNDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKMEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPEPVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGNAQTKAVEHTEEKIQEKDVAETEILESQKIAAVELMHVEEKADVEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVADKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9069431 9082637 + CcPI632755_09g009630.1 Cco09g0963 187420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0963 1387 MobiDBLite consensus disorder prediction 436 457 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 199 214 - -
Cco09g0963 1387 FunFam Eukaryotic translation initiation factor 5B 789 1017 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 673 792 - -
Cco09g0963 1387 Coils Coil 1232 1252 - -
Cco09g0963 1387 PRINTS GTP-binding elongation factor signature 863 873 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 PRINTS GTP-binding elongation factor signature 915 924 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 PRINTS GTP-binding elongation factor signature 799 812 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 PRINTS GTP-binding elongation factor signature 879 890 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 MobiDBLite consensus disorder prediction 363 655 - -
Cco09g0963 1387 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 446 1386 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Cco09g0963 1387 FunFam eukaryotic translation initiation factor 5B 1018 1137 - -
Cco09g0963 1387 Pfam Elongation factor Tu domain 4 1257 1330 IPR029459 -
Cco09g0963 1387 Coils Coil 507 574 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 363 379 - -
Cco09g0963 1387 CDD aeIF5B_II 1019 1129 - -
Cco09g0963 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 1086 IPR027417 -
Cco09g0963 1387 CDD IF2_aeIF5B_IV 1258 1353 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 247 261 - -
Cco09g0963 1387 CDD IF2_eIF5B 798 1008 - -
Cco09g0963 1387 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1120 1249 IPR036925 -
Cco09g0963 1387 Gene3D Translation factors 1018 1136 - -
Cco09g0963 1387 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 795 1011 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 MobiDBLite consensus disorder prediction 138 185 - -
Cco09g0963 1387 NCBIfam small GTP-binding protein domain 800 926 IPR005225 GO:0005525(InterPro)
Cco09g0963 1387 MobiDBLite consensus disorder prediction 639 655 - -
Cco09g0963 1387 FunFam Eukaryotic translation initiation factor 5B 1137 1243 - -
Cco09g0963 1387 Pfam Elongation factor Tu GTP binding domain 798 1007 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g0963 1387 MobiDBLite consensus disorder prediction 753 781 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 143 165 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 299 313 - -
Cco09g0963 1387 SUPERFAMILY Translation proteins 1254 1386 IPR009000 -
Cco09g0963 1387 Coils Coil 444 473 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 392 407 - -
Cco09g0963 1387 Pfam Translation-initiation factor 2 1124 1236 IPR023115 -
Cco09g0963 1387 Gene3D - 790 1017 IPR027417 -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 478 591 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 678 698 - -
Cco09g0963 1387 Gene3D - 1137 1243 IPR036925 -
Cco09g0963 1387 Gene3D Translation factors 1250 1387 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 32 110 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 197 350 - -
Cco09g0963 1387 MobiDBLite consensus disorder prediction 711 729 - -
Cco09g0963 1387 FunFam Eukaryotic translation initiation factor 5B 1250 1387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0963 Cco-Chr9:9069431 Cco11g1676 Cco-Chr11:29598577 6.80E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0963 K03243 - csv:101204360 2028.06