Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0965 | ATGCTGATGGAACCCAATTTCTCGTCGGCGAAGCGACCGCAGCCGGCAGGGATGGACATTGAACAGATGTCGGAGAATCCTCACCGTGGTTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCAAACCTCGACGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCACCTCCTGGCGGCACTGCCATGGCGGTTGATTCGTCTAATGCTAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCGGAGCCGATTGCCTCTGGACCATTCGGTGGTCACTTGCGGAGCTTGTCCATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGTGGTGATAGTGGGGAGATCGATTCTTTGGGGAAGAAGACTCCGGCGAGTGAGCAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAAACCTAGTGATTGATGGAGTGAAGAAAGCAATGGATCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTAGCGAACAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACAAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAAGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAGGCCAGGTTGCATTGATCAACGGAAATCTTTTCAACCGACCTCCTCAATATCCTTCATCCCGGCCACCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCCGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAGCAATCAGATCCCAAATGGACAAACTCGTCTCAGCTTCTCAGTCGAAGTCCGGATGGCCAAGCAAAGCCTTAG | 1062 | 52.07 | MLMEPNFSSAKRPQPAGMDIEQMSENPHRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPPGGTAMAVDSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPASEQRPVRHRHSLSMDGSSSSFEADSNLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVALINGNLFNRPPQYPSSRPPVHHFSSSHAQQGQQPQPPPMLATNQQQQSDPKWTNSSQLLSRSPDGQAKP | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9108695 | 9111824 | + | CcPI632755_09g009650.1 | Cco09g0965 | 187422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0965 | 353 | MobiDBLite | consensus disorder prediction | 294 | 353 | - | - | |
Cco09g0965 | 353 | SMART | brlzneu | 183 | 247 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0965 | 353 | Gene3D | - | 186 | 239 | - | - | |
Cco09g0965 | 353 | Pfam | bZIP transcription factor | 187 | 234 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0965 | 353 | Coils | Coil | 210 | 230 | - | - | |
Cco09g0965 | 353 | Coils | Coil | 238 | 258 | - | - | |
Cco09g0965 | 353 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
Cco09g0965 | 353 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cco09g0965 | 353 | FunFam | Transcription factor VIP1 | 186 | 239 | - | - | |
Cco09g0965 | 353 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 19 | 337 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco09g0965 | 353 | MobiDBLite | consensus disorder prediction | 126 | 157 | - | - | |
Cco09g0965 | 353 | MobiDBLite | consensus disorder prediction | 302 | 347 | - | - | |
Cco09g0965 | 353 | CDD | bZIP_plant_RF2 | 188 | 237 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0965 | 353 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 185 | 248 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0965 | 353 | SUPERFAMILY | Leucine zipper domain | 187 | 238 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0233 | Cco-Chr2:2211156 | Cco09g0965 | Cco-Chr9:9108695 | 3.10E-10 | dispersed | |
Cco08g0830 | Cco-Chr8:20133291 | Cco09g0965 | Cco-Chr9:9108695 | 2.50E-87 | dispersed | |
Cco09g0965 | Cco-Chr9:9108695 | Cco11g1824 | Cco-Chr11:30912410 | 3.60E-09 | dispersed | |
Cco09g0965 | Cco-Chr9:9108695 | Cco02g0997 | Cco-Chr2:12467048 | 4.30E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59946 | PF00170 | bZIP_1 | 6.30E-08 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0965 | K20557 | - | csv:101207973 | 595.119 |