Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0965 ATGCTGATGGAACCCAATTTCTCGTCGGCGAAGCGACCGCAGCCGGCAGGGATGGACATTGAACAGATGTCGGAGAATCCTCACCGTGGTTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCAAACCTCGACGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCACCTCCTGGCGGCACTGCCATGGCGGTTGATTCGTCTAATGCTAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCGGAGCCGATTGCCTCTGGACCATTCGGTGGTCACTTGCGGAGCTTGTCCATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGTGGTGATAGTGGGGAGATCGATTCTTTGGGGAAGAAGACTCCGGCGAGTGAGCAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAAACCTAGTGATTGATGGAGTGAAGAAAGCAATGGATCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTAGCGAACAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACAAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAAGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAGGCCAGGTTGCATTGATCAACGGAAATCTTTTCAACCGACCTCCTCAATATCCTTCATCCCGGCCACCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCCGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAGCAATCAGATCCCAAATGGACAAACTCGTCTCAGCTTCTCAGTCGAAGTCCGGATGGCCAAGCAAAGCCTTAG 1062 52.07 MLMEPNFSSAKRPQPAGMDIEQMSENPHRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPPGGTAMAVDSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPASEQRPVRHRHSLSMDGSSSSFEADSNLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVALINGNLFNRPPQYPSSRPPVHHFSSSHAQQGQQPQPPPMLATNQQQQSDPKWTNSSQLLSRSPDGQAKP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9108695 9111824 + CcPI632755_09g009650.1 Cco09g0965 187422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0965 353 MobiDBLite consensus disorder prediction 294 353 - -
Cco09g0965 353 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0965 353 Gene3D - 186 239 - -
Cco09g0965 353 Pfam bZIP transcription factor 187 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0965 353 Coils Coil 210 230 - -
Cco09g0965 353 Coils Coil 238 258 - -
Cco09g0965 353 MobiDBLite consensus disorder prediction 84 104 - -
Cco09g0965 353 MobiDBLite consensus disorder prediction 1 41 - -
Cco09g0965 353 FunFam Transcription factor VIP1 186 239 - -
Cco09g0965 353 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 337 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco09g0965 353 MobiDBLite consensus disorder prediction 126 157 - -
Cco09g0965 353 MobiDBLite consensus disorder prediction 302 347 - -
Cco09g0965 353 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0965 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0965 353 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0233 Cco-Chr2:2211156 Cco09g0965 Cco-Chr9:9108695 3.10E-10 dispersed
Cco08g0830 Cco-Chr8:20133291 Cco09g0965 Cco-Chr9:9108695 2.50E-87 dispersed
Cco09g0965 Cco-Chr9:9108695 Cco11g1824 Cco-Chr11:30912410 3.60E-09 dispersed
Cco09g0965 Cco-Chr9:9108695 Cco02g0997 Cco-Chr2:12467048 4.30E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59946 PF00170 bZIP_1 6.30E-08 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0965 K20557 - csv:101207973 595.119