Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0972 ATGTCGTTAGTTAGGCCATCTGATCCATCTCCATTATCATATGGAAGTCGCAAGCTTTACTCGTTGAAGGGAACAAATAATGCTCCTGACTTATCCACACAAAGATTTGGCTCTGAAAAACATAGAACGATGTATATGAATGATACATATTGCAGTGAGAACTATGAGAAGTATTTCCTCGACTTCCCGATAGAAGAGCCATCGATTTCAGGAATTTCTACCAATTCTTGTCACCCCAACGCTTGGGTTGATTCTCTATCCCCCTTGTGTGATTCATTTACACTTTTTGATGCTTGTCAATCAAATTCAGACTCAGCTTGCCTCGAGAGTACGAGTCCAGACCAACTTGATTTTGAGGATGATCAAGTGAGAGTGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGACCCGGATGCTGCAGATTACGATGTTGAGATGCTTGCTAACGGCCAGAGCATGGAAATTGATAGCGAATGGGCAAATTCGATTCAAGATGCACTACTTCATGACTCGCCAAAGGAATCTTCGTCGACAGATTCTAATTTCAGTACTATCAGCAGCAATAAGGATGCATCTCAGATATCTTCACAGAATCCCAGACAACTGCTTTTAGAATGTGCTTTTGCTATCTCAGAGGAGAACTTCGAAGAAGCGTCAGCCATGATAGAACAGCTCCGAGGTATGGTCTCTGTTCAGGGAGATCCCTCACAGAGGATTGCTGCGTATATGGTGGAAGGTCTTGTGGCTCGGTCGTTGGAATCAGGAAAATGTCTTTATAAAGCTTTGAGATGCAAGGAACCACCTTCCTCCGACCGTCTTGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCGTGTTTCAAATTTGGCTTTATGGCTGCAAATTGTGCCATTATTGAGGCAGCGAAAGATGAGAAGAAAATTCACATAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGTCAGGTAAGCCACCACACTTGAGGTTAACAGGGGTTGACGACCCCGAATCGGTACAGCGCCCCGTTGGAGGTCTTAGGCACATTGGACAAAGACTCGAGCAACTAGCAAAAGCACTGCGGGTTCCATTTGAATTTCGAGCGATTCCCTCAAATGCTTCTGATGTTACTCCCTCAATGCTCGCCTCTCGGCCTGGAGAAGCACTCATAGTGAACTTTGCTTTCTTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGTATGGTCAAGAGCTTGAACCCGAAACTAGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTTTCAAGATTTGTCGAAGCCTATAACTACTACGCAGCTGTTTACAATTCCCTTGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAATGCTTGGCAAAGGATATAGTCAACATTGTAGCTTGTGAAGGTGAGGAAAGAGTAGAGAGATACGAAGTAGCCGGGAAATGGCGGGCAAGAATGACGATGGCAGGCTTCAGTTCCTGTTCAATGAGCAAAAACGTGACCGACCCGATTCGCAAACTGATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGCACACTTCATTTTGGATGGGAAGAGAAAAGCTTGGTTGTTACTTCGGCATGGAGGTAA 1713 44.6 MSLVRPSDPSPLSYGSRKLYSLKGTNNAPDLSTQRFGSEKHRTMYMNDTYCSENYEKYFLDFPIEEPSISGISTNSCHPNAWVDSLSPLCDSFTLFDACQSNSDSACLESTSPDQLDFEDDQVRVKLQELERDLLGDPDAADYDVEMLANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNFSTISSNKDASQISSQNPRQLLLECAFAISEENFEEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLVARSLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKKIHIIDFDVSQGTQYIKLIQMLAAQSGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFRAIPSNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYNSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFSSCSMSKNVTDPIRKLIEEYCDRFKMYEEMGTLHFGWEEKSLVVTSAWR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9199729 9201441 + CcPI632755_09g009720.1 Cco09g0972 187429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0972 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 569 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco09g0972 570 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
Cco09g0972 570 MobiDBLite consensus disorder prediction 171 194 - -
Cco09g0972 570 Pfam GRAS domain family 201 570 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0099 Cco-Chr1:796889 Cco09g0972 Cco-Chr9:9199729 1.80E-72 dispersed
Cco02g2141 Cco-Chr2:34191314 Cco09g0972 Cco-Chr9:9199729 8.60E-56 dispersed
Cco09g0972 Cco-Chr9:9199729 Cco10g0442 Cco-Chr10:5210510 1.30E-112 dispersed
Cco09g0972 Cco-Chr9:9199729 Cco03g0141 Cco-Chr3:1373861 6.40E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59947 PF03514 GRAS 4.00E-129 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0972 K27748 - csv:101206511 1071.61