Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0978 ATGGTGGCACATCATAATTTAAAAAATGGGAAAGCAAGAACAAATTACCTACGCTCATGTTTGAACCAAGTTTGGATAATCCCCTGCCTCCTCACATTGCTCATTGCCATTGCTTGCACCTACACACTCCTCTTCCCAAACATCCACGAAATCCTTCAGATCTACAACTTCACCGCAACATCCCAAAGCATAAAAAGCAGTAGAAGCACCGAATCCGTCGATTGCAACGTGTTCGATGGGCAGTGGGTGGAAGACAACTCCAGGTTTGATCCTGGAAAAGCGTTGGAGATGTTGCGAGGGAAGCGGGTGGTGTTCGTCGGAGACTCGCAGAGTCGAACGCAGTGGGAATCGTGGATTTGCATGTTGATGGAGGGAGTGAAGAAGAAGGAAAGCGCCGAAGCTAATATCAACCCCAATAGAACCATCGTCGTCGTTCGCACTATTGAATATTCTACTCATTTGAGAGGTCCTAATCAATGCGATGTGAGTCAACAACCATTAAAAGAAACAAAAGGGAGAAACAAGAATGAAAAATCAGACATAATAATGGAAGTTTTGAAGAAGAAGATGAAGAGAGTTCCAGTGAAAGTGATGCGTTTAACTCCAATGGGATCTTACAGAAGTGATGCCCATGTGGGAAATTGGGGTGACAATCCTTCTATGCAAGATTGTGGCCATTGGTGTCTTCCTGGCCTTCCTGATATTTGGAATGAAATTCTCTTATCTTATTTTCTCCCTAAAACATTCTCTTTTAGTTCTAACTAG 765 43.27 MVAHHNLKNGKARTNYLRSCLNQVWIIPCLLTLLIAIACTYTLLFPNIHEILQIYNFTATSQSIKSSRSTESVDCNVFDGQWVEDNSRFDPGKALEMLRGKRVVFVGDSQSRTQWESWICMLMEGVKKKESAEANINPNRTIVVVRTIEYSTHLRGPNQCDVSQQPLKETKGRNKNEKSDIIMEVLKKKMKRVPVKVMRLTPMGSYRSDAHVGNWGDNPSMQDCGHWCLPGLPDIWNEILLSYFLPKTFSFSSN 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9262534 9264852 + CcPI632755_09g009780.1 Cco09g0978 187435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0978 254 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 88 131 IPR026057 GO:0016740(InterPro)
Cco09g0978 254 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 132 242 IPR026057 GO:0016740(InterPro)
Cco09g0978 254 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 132 243 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0978 Cco-Chr9:9262534 Cco10g1132 Cco-Chr10:23726612 1.30E-11 dispersed
Cco09g0977 Cco-Chr9:9258297 Cco09g0978 Cco-Chr9:9262534 7.20E-105 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008701 0 1 0 0 0 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 3 1 2 1 1 1 0 35