Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0988 ATGGTTCCTTTTAAGCGTTCCCCTCGGCAAACTCCGATTCTCTCTCCTCTCATCTCTCTCTCTCTCTCTCTCTCTCTTTCCCCTCCGCCGGAACTCCGTCGTCAGCACGTTTTCCGTCCAAGAGTCCTCTTTTTCCTCTATTATTCCGGCGGTTTGCCGTCGTACTTTTCCTTTTCCGGCAGAATCTCTGTTTCTTTGCCGGAGAGTTGGAGTAGATGTCCTGTGGTTTGGCTTTACTTGGAATGGAGGTGGTGTGGTTTAGCTATTGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACACTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCTGTGTTCCAACGATATCTACGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGGTCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGTCTGAAAGCATTAGTTGGTTCTGGTGATGGTGGGCGTTCTAAGATTGATGGATGGAATGATGGAGGCCTCTATCAAGATGACAACAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTACTTTTAGTCCAAACAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAACCAGACAAATATGCAAGCTAAAGGATCTAGTTCAGATATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATACATATGGGGTGAGGTTATTAGTGATAATTTTATGAAGCCTGGGGCTGATAGAGCTATTAGTGTGAGCTCAAGGACAGATGTGCTACTTCCAAAGCCATTAGAATCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGTGTCAGGCATTCTGCGATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTGGGAATGGGGAAAGATGTAACACAACCTCGCCTTGTTGAAGCCTTGGCAGCTACTACAGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAGCTTTACACATGGGGAGATGGTGTACATAATGCTGGGCTTCTTGGTAATGGAACTGATGTCAGCCATTGGATGCCAAAGAGAATCTCAGGTATTCTTGAGGGGCTTCAAGTTGCATTTGTAGCATGTGGTCCGTGGCATACAGCGTTGATCTCATCTATGGGGCAACTATTCACCTTTGGCGATGGTACTTTTGGGGTTTTGGGTCATGGTGATAAAAAAAGCATTTCATATCCGAGAGAAGTGGAGTCCTTAACAGGCTTGAGGACAATTGCTGTTGCATGCGGAGTGTGGCATACCGCTGCTGTGGTTGAAGTAATGACACAATCTAGTACAAGCATCTCGTCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAGGGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTAATTGACTACAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAACTTGGAAATCCCCTTGCTGATGGAAAGCAACCATGCTTGGTGGAAGATAAGCTTTCCGGGGAGTGTGCTGAAGAGGTTGCTTGTGGTGCGTATCATGTGATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAAGGTGCAAATGGGAGGTTAGGCCATGGAGACGTTGAGGATCGGAAATCACCAACTTTGGTTGAATCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGTTCTAACTACTCCGCAGCTATTTGTCTACACAAATCATTGTCAGGCACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCGTGTAGTTCTAAAAAAGCATTAAGAGCTGCCCTGGCTCCTACTCCTAGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCAGAATCTGGAATCAATTACCGGAAAAATGCTGTTCCCCGCCTGTCAGGTGAGAACAGGGACAAGCTGGATAAGAGTGACACAAGACCTCCTAAAACAGCACTTTCAAATATGGATCTGATAAAACAACTCGATAGCAAAGCAGCAAAGCAAGGGAAGAGAACAGATACATTCTCCATTGCTCGCCCCACTCAAGCACATACTCTTCTTCAACTCAAAGATGGTCCAAATACTGTTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCCAATGGAGTAAATTCCAGATCTGTGTCACCTTTGTCAAGGAGATCTAGTCCGCCAAGGTCTGGTACACCTGTGCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAGAAAACAAACGAACTCTTAAATCAAGAGGTTCTAATGCTGCGTGCACAGGTTGAGAGCCTGAGGAAGAGATGTGAACTTCAAGAATTAGAACTTCGGAAGTCAGAAAAGAAAGCACAAGAAGCCATTGCATTGGCTGCAGAGGAATCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAACATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGTCTTCCTGGAATTAATGACTCTGAAAACATGAGACCATTGTATGTTCCAAATGGTATGGAGCAAAATGGTGCCCACCATTTAGCTTCCAATGGAGAGCGTCTTTCAGAATCAGATTCACAGAGCTCCTTGTCCTTGGCTTCTTCAGTTGCAACTGATTGTTCCTTGAGTAACGGAATTCAAGGTCTAGCTAATGCATCTGGAGAGTTCCCTGCAAGTAATGAAACTAACTCAGCCTCAGAGCCAGGGCGATTTACCTCTGATGGGACAGATGATGATCCAGATGTAAGACTCTCTTATGGTCATAGAGGTCTTTGGGAAAGCGGCCGCAGTAGCAGCATGTCAGAAGGAGCAGATAACTCGGGTCCTTTACTAGACAGTGAGAGGAACACAAGATCAAGAAGTTCTGCATTGCCAAGAAATGACAATCAAGTTGAGGCTGAATGGATTGAGCAATATGAACCTGGTGTCTACATAACTTTGACGGCACTTCGTAATGGGACTAGAGATCTTAAACGAGTGCGCTTCAGTCGGAGGCGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGTGATAAAGTCTACGAGAAATATAACGTTCGTGGAACCGAAAAATCTTCAATTTCTCCAAGTCCTCCATGA 3615 44.26 MVPFKRSPRQTPILSPLISLSLSLSLSPPPELRRQHVFRPRVLFFLYYSGGLPSYFSFSGRISVSLPESWSRCPVVWLYLEWRWCGLAIADLVSYGNANRDTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALVGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSSNSVTRDISSPEVCVTFSPNKSPTSVRSENSTRSHVPLNQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFMKPGADRAISVSSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTDVSHWMPKRISGILEGLQVAFVACGPWHTALISSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLTGLRTIAVACGVWHTAAVVEVMTQSSTSISSGKLFTWGDGDKNRLGHGDREPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPLADGKQPCLVEDKLSGECAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVESLKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGINYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIARPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRRSSPPRSGTPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELELRKSEKKAQEAIALAAEESAKSKAAKEVITSLTAQIKHMAERLPDGVKMGLPGINDSENMRPLYVPNGMEQNGAHHLASNGERLSESDSQSSLSLASSVATDCSLSNGIQGLANASGEFPASNETNSASEPGRFTSDGTDDDPDVRLSYGHRGLWESGRSSSMSEGADNSGPLLDSERNTRSRSSALPRNDNQVEAEWIEQYEPGVYITLTALRNGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISPSPP 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9376439 9384383 - CcPI632755_09g009880.1 Cco09g0988 187445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 492 506 IPR000408 -
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 476 492 IPR000408 -
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 593 611 IPR000408 -
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Cco09g0988 1204 PRINTS Chromosome condensation regulator RCC1 signature 651 672 IPR000408 -
Cco09g0988 1204 Pfam Transcription factor regulating root and shoot growth via Pin3 1134 1189 IPR013591 -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 434 IPR000408 -
Cco09g0988 1204 SMART fyve_4 706 775 IPR000306 GO:0046872(InterPro)
Cco09g0988 1204 Gene3D - 544 720 IPR009091 -
Cco09g0988 1204 Gene3D - 275 543 IPR009091 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 1094 1128 - -
Cco09g0988 1204 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 528 538 IPR000408 -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 541 IPR000408 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 231 295 - -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 784 816 - -
Cco09g0988 1204 FunFam PH, RCC1 and FYVE domains-containing protein 1 293 542 - -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 1054 1128 - -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 870 899 - -
Cco09g0988 1204 FunFam PH, RCC1 and FYVE domains-containing protein 1 543 713 - -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 489 IPR000408 -
Cco09g0988 1204 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Cco09g0988 1204 Coils Coil 905 953 - -
Cco09g0988 1204 CDD PH_PLC_plant-like 100 211 - -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 1054 1073 - -
Cco09g0988 1204 Pfam FYVE zinc finger 714 774 IPR000306 GO:0046872(InterPro)
Cco09g0988 1204 Pfam Transcription factor BRX N-terminal domain 956 986 IPR027988 -
Cco09g0988 1204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 780 IPR013083 -
Cco09g0988 1204 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 244 1164 IPR051210 -
Cco09g0988 1204 Gene3D - 100 215 IPR011993 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 1007 1032 - -
Cco09g0988 1204 SUPERFAMILY RCC1/BLIP-II 321 708 IPR009091 -
Cco09g0988 1204 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 712 774 IPR017455 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 861 899 - -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 382 431 IPR000408 -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 434 486 IPR000408 -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 551 599 IPR000408 -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 490 538 IPR000408 -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 657 704 IPR000408 -
Cco09g0988 1204 Pfam Regulator of chromosome condensation (RCC1) repeat 603 652 IPR000408 -
Cco09g0988 1204 CDD FYVE_like_SF 717 770 - -
Cco09g0988 1204 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 656 707 IPR000408 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 790 805 - -
Cco09g0988 1204 SUPERFAMILY PH domain-like 101 211 - -
Cco09g0988 1204 ProSiteProfiles BRX domain profile. 1135 1190 IPR013591 -
Cco09g0988 1204 MobiDBLite consensus disorder prediction 1074 1088 - -
Cco09g0988 1204 Pfam Pleckstrin homology domain 103 212 IPR001849 -
Cco09g0988 1204 SUPERFAMILY FYVE/PHD zinc finger 712 779 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0988 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0198 Cco-Chr4:4715832 Cco09g0988 Cco-Chr9:9376439 2.00E-36 dispersed
Cco08g0801 Cco-Chr8:19866657 Cco09g0988 Cco-Chr9:9376439 0.00E+00 dispersed
Cco09g0084 Cco-Chr9:760108 Cco09g0988 Cco-Chr9:9376439 1.60E-15 dispersed
Cco09g0988 Cco-Chr9:9376439 Cco10g1355 Cco-Chr10:26605147 3.6e-311 dispersed
Cco09g0988 Cco-Chr9:9376439 Cco03g1309 Cco-Chr3:26050196 5.80E-293 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83