Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0997 ATGTCCAGCGACAGCGACGACCTGGACGAGGATGAGCTGCTGCAGATGGCTCTCAAGGAGCAACAACAGCGCGATGTCAATTATCTCACTAATTCTCGTAAGCCCGTTGCTAATTACGTCCAACCGCCGTCTCAGTCCAGGAAATCGGCTTCTGCAGCTGCCGTATCTAAAGCCAGTGGCAGTAATGCGCAGCCTAAGGGTAGTCGGAGGGTTGTCGACGACGACGACGATTCCGAGGTCGAGATGCTGAGCATTTCCAGTGGCGATGAGGATTCCACCAAAGATCATCGAACGTCTGCCGCGACCCGCGGCGGTAGGGCGTCTAGGTCCTCTGGGAGGGACGATGATCCGGGATGGGATGGCGAGGAGCCTCATTGCTGGAAGCACGTTGATGAAGACGAGCTTGCTAGAAGAGTACGTGAAATGCGGGAGACAAGAACAGCACCTGCTCCTCAGAAGTTCGACCGAAAGGTATCTGCAATCGGTAGACCAGGACTCAACCATTTGCAGTCCTTTCCTCGTGGCATGGAATGTATAGATCCACTTGGGTTGGGAGTAATAGACAATAGATCATTAAGATTGATCACAGAGGCATCTGAGAGCTCTCCTTCTAAATCTGATAAAGAATTCATCGATAGTACCTTACGAGAAAAGTTGCTGTATTTCTCTGAAAAATTTGATGCAAAGCTTTTTATTTCTCGGATACACCAAGACACAAGTGCAGGAGACTTGGAGAAAGGCGCTTTTGCTTTAAAAACTGACCTTAAAGGACGGACACAACAAAGAAAACAATTAGTCAAAGACAACTTTGACTGCTTTGTATCATGCAAAACAACAATTGATGATATTGAGTCCAAGTTGAGACGAATTGAAGAAGACCCTGAAGGATCTGGAACTTCACATTTGTTTAATTGTATTCAAGGAGTAAGCAAGCAAGCCAATCGAGCTTTTCAGTCTCTGTTTGAGAGACAGGCACAAGCTGAAAAGATCAGGTCAGTCCAAGGAATGCTGCAAAGGTTCAGAACACTTTTTAACTTGCCAAGTACCATTCGCAGCAGCATTAGTAAGGGTGAATATGACCTGGCAGTTCGGGAATACAAAAAAGCGAAGTCAATTGCTTTGCCATCTCATGTGGGAATTTTGAAAAAAGTTCTTGAAGAGGTTGAAAAAGTGATGCATGAGTTCAAAGGCACACTTTACAAGTCAATGGAAGACCCACAAATAGATTTGACAAACCTTGAAAACACTGTGAGACTACTATTGGAGCTGGAGCCTGAATCAGATCCTGTTTGGCATTATTTAAACATACAGAATCACAAGATACGAGGTTTGCTTGAGAAGTGCACCTTAGATCACGAGTCAAGAATGGAAGCATTGAATAATAAAATGCGTGAAAGAGCTCTTGCTGATGCAAGATGGCGGCAGATTCAACATGATCTTGATCAATCTTCAGATGTTCATCATTCTTCTGCTGTGAATAGCCATCTCCCAGTGGGTGTGGAACCCGTGGAAGTAAATAGTGAAGAAGTTGATGCTCTTAGAGCTAGATATATTCAGAGATTGACTGCTGTACTTATCCATCACATACCGGTGTTTTGGAAAACTGCTCTTTCCGTTTTCAGTGGGAAATTTGCCAAGTCTTCTCAAGTTTCTGCTGAATCAAATGCTAACGCCTTGGCTAGCAAAAATGAGGACAAGATTGGTGAGGGGAAATACTCAAATCATTCTCTTGAGGAAGTTACTGGGATGATACGCAATACACTAGCTGTATATGAAGTAAAGGTTCACAGCACCTTTCGTGAGCTTGAAGAATCAAATATCCTTCAACCGTATATGAGTGATGCCATAAATGAAATATCTAATGCATGTCAAGCTTTTGAAGTGAAGGAATCAGCTCCTTCAAGCGCTGTAATTGCACTGCGAACACTTCAATCAGAGGTGACAAAGATTTATATTTTAAGGCTTTGTGCCTGGATGCGAGCCTCCATTGTAAAAGTTTCAAAAGATGAAACATGGGTCCCTGTGTCAATTATTGAGAGGAATAAATCTCCATACACAATCTCTTTCTTGCCTCTAGCATTTCAATCTATCATGTCTTCAGCAATGGATCAAATAAATTTTATGGTTCAGTCTTTAACAAGCGAGGCTTCAAAGTCGGAGGATATATTTTTGCTACTTCAAGAAATCGAGGAGTCTGTTAGACTTGCATTTTTGAACTGTTTCCTTGATTTTGCAGGTCATCTGGAGAATATTGGAAGTGGGCTTACCCAAAACAAACAAAACAAAGACAGTCCACACTTGCAGAATGGATTTTCTCATGAATTGCAAGAAAAACTACTTTTAGATGTGCCTGGGAGTCTCGTGAATCCACATCAACAATTGTTAATAGTCTTGAGCAATATTGGTTTTTGCAAAGACGAGCTTTCATGTGAATTGTACAGCAAGTACAAGCATATTTGGTCGCATTCTAGGGTAAAAACTGAAGAGGATACCAGTGACCTCCAAGATCTTGTTATGTCCTTTTCTGCACTTGAAGAAAAGGTCCTTGAACAGTACACATATGCAAAGGCAAACTTGATGAGAACTGCTGCAACTAACTATTTATTGGATTCCGGAGTCCACTGGGGAGCTGCTCCTGCAGTTAAAGGTGTGCGTGATGCAGCTGTAGAGCTACTCCATACTCTTGTGTCTGTCCATGCTGAGGTTATTGCTGGTTGTAAGCCCCTTTTGGACAAGACACTAGGAATTCTTGTTGAAGGTTTAATTGATACTTTTCTCAGCATTTTTGATGAAAATGGAACAAACGAGCTCCGGTCACTTGATACCAATGGTTTCTGCCAACTCATGCTTGAGCTCGAGTACTTTGAGACCATATTAAATCCTTATTTCACATCCGACGCTAGAGAGTCTTTGAAGTCTTTGCAAGGAGTGCTTTTGGAGAAAGCTACTGAAAGTGTGACAGAGGCAGCTGATAATCCAGGCCATAATCGTCGGCCAACTCGTGGGAGCGAGGAAGCTCTAGATGAACGACAACAGGGCGCAACTGCCCCAGATGAACTCATTGCACTGGCACAGCAGTACAGCACAGAATTGCTTCAACAAGAGCTTGAGAGAACACGAATAAACACTGCTTGCTTTGCAGAGTCGATTTCATTAGATTCGGTTCCCGAACCAGCCAAGGCAGCATACACTTCATTTAATGCCACTTATAGAGGAGGCACAACTCCAACCGGTTCTCCGAGTTTCTCATCCCGGAGCAGGCGTCGCTTGTAG 3273 43.35 MSSDSDDLDEDELLQMALKEQQQRDVNYLTNSRKPVANYVQPPSQSRKSASAAAVSKASGSNAQPKGSRRVVDDDDDSEVEMLSISSGDEDSTKDHRTSAATRGGRASRSSGRDDDPGWDGEEPHCWKHVDEDELARRVREMRETRTAPAPQKFDRKVSAIGRPGLNHLQSFPRGMECIDPLGLGVIDNRSLRLITEASESSPSKSDKEFIDSTLREKLLYFSEKFDAKLFISRIHQDTSAGDLEKGAFALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSGTSHLFNCIQGVSKQANRAFQSLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRSSISKGEYDLAVREYKKAKSIALPSHVGILKKVLEEVEKVMHEFKGTLYKSMEDPQIDLTNLENTVRLLLELEPESDPVWHYLNIQNHKIRGLLEKCTLDHESRMEALNNKMRERALADARWRQIQHDLDQSSDVHHSSAVNSHLPVGVEPVEVNSEEVDALRARYIQRLTAVLIHHIPVFWKTALSVFSGKFAKSSQVSAESNANALASKNEDKIGEGKYSNHSLEEVTGMIRNTLAVYEVKVHSTFRELEESNILQPYMSDAINEISNACQAFEVKESAPSSAVIALRTLQSEVTKIYILRLCAWMRASIVKVSKDETWVPVSIIERNKSPYTISFLPLAFQSIMSSAMDQINFMVQSLTSEASKSEDIFLLLQEIEESVRLAFLNCFLDFAGHLENIGSGLTQNKQNKDSPHLQNGFSHELQEKLLLDVPGSLVNPHQQLLIVLSNIGFCKDELSCELYSKYKHIWSHSRVKTEEDTSDLQDLVMSFSALEEKVLEQYTYAKANLMRTAATNYLLDSGVHWGAAPAVKGVRDAAVELLHTLVSVHAEVIAGCKPLLDKTLGILVEGLIDTFLSIFDENGTNELRSLDTNGFCQLMLELEYFETILNPYFTSDARESLKSLQGVLLEKATESVTEAADNPGHNRRPTRGSEEALDERQQGATAPDELIALAQQYSTELLQQELERTRINTACFAESISLDSVPEPAKAAYTSFNATYRGGTTPTGSPSFSSRSRRRL 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9475683 9498470 - CcPI632755_09g009970.1 Cco09g0997 187454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0997 1090 MobiDBLite consensus disorder prediction 1068 1090 - -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 984 1013 - -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 88 125 - -
Cco09g0997 1090 Pfam Exocyst complex component Sec5 180 1046 IPR039481 -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 994 1012 - -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 23 66 - -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 1068 1084 - -
Cco09g0997 1090 MobiDBLite consensus disorder prediction 23 125 - -
Cco09g0997 1090 PANTHER EXOCYST COMPLEX COMPONENT SEC5 29 1063 IPR029175 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006893(InterPro)|GO:0006893(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0997 K17637 - - csv:101215110 1947.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1384 . . . . Bpe02g00238 . . . . . . . Car01g00873 . . Cpe06g00902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . Cla09g00935 Cam09g0987 Cec09g0992 Cco09g0997 . . Cre09g0953 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006308 1 4 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 2 1 2 1 1 1 1 1 38