Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1008 ATGGCCTTCAGTTCTACAGTAGCATCGCAGCTTCATGTTTTCCGAACCTCCAATCTCCGATTCCCGGACTCCAACAAATCCTGGAATCGGAGACGGCGAAGCACAGCGGTCTCCGTAATCCGGTGCGAGAAGGTCGTGGGAATCGACCTAGGAACGACGAACTCAGCGGTGGCGGCAATGGAGGGAGGGCAGCCGACGATCGTGACAAACGCGGAGGGACAGAGGACGACGCCGTCGGTGGTAGCGTACACGAGGAACGGCGATCGGCTTGTTGGTCAGTTGGCGAAGCGGCAGGCGGTGGTTAATCCGGAGAACACTTTCTTCTCCGTGAAGAGGTTCATTGGAAGGAAAATGGCGGAGGTGGACGAAGAGGCGAAGCAAGTGTCTTACAAGGTTATCGCCGATGAGAATGGGAATGTGAAGCTCGATTGCCCTGCCGTCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCTCAGGTTTTAAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAATGATCAAGTAGGAAAAGCTGTAGTAACAGTACCAGCATATTTCAATGACTCTCAAAGAACAGCGACGAAAGATGCTGGTCGCATTGCTGGTCTCGAAGTTCTTCGCATCATCAATGAACCAACTGCTGCTTCACTTGCCTATGGCTTTGACAAGAAAACCAATGAGACCATTCTCGTTTTCGACCTTGGTGGTGGAACGTTTGACGTCTCAGTCCTCGAGGTTGGAGATGGCGTATTTGAGGTGCTTTCTACTTCAGGCGATACACATTTGGGTGGAGATGATTTTGACAAGAGGATTGTCGATTGGCTCGCCGAGAGCTTTAAGAGGGATGAAGGAATTGATCTTCTGAAAGACAAACAAGCGCTGCAACGTTTAACGGAAACTGCTGAGAAGGCAAAGATTGAGTTATCATCTTTAACACAGACCAATATTAGTTTGCCATTTATCACTGCAACCAGCGACGGCCCGAAACATATTGATACTACGCTTACTAGGGTCAAGTTTGAAGAGTTATGTTCAGACTTGCTAGATAGGCTGCGATCACCGGTTGAAACGGCTCTAAAGGATGCAAAGTTGTCGTTCAAAGATATAGATGAAGTCATTCTTGTTGGGGGCTCGACTCGTATCCCAGCAGTTCAGGAGCTTGTCAAGAAAATGACAGGGAAAGAACCGAATATGACTGTAAATCCTGATGAAGTGGTTGCTCTCGGGGCCGCAGTTCAGGCTGGTGTTTTGGCTGGAGATGTCAGTGACATTGTTCTCTTAGATGTCACACCTCTCTCTCTCGGTTTGGAAACTTTAGGTGGAGTGATGACCAAAATCATTCCAAGGAACACAACCTTACCCACATCCAAATCGGAGGTGTTTTCAACAGCAGCAGATGGACAAACAAGTGTTGAGATTAATGTATGTCAAGGCGAACGAGAGTTTGTTCGGGACAATAAGTCTCTCGGACGAATTCTCCTGGACGGTATCCCACCTGCACCTCGTGGTGTTCCTCAGATTGAAGTGAAATTTGACATTGATGCTAATGGCATTCTCTCTGTAACTGCCATTGACAAGGGAACCGGGAAGAAGCAGGACATCACAATCACTGGCGCTAGTACTTTACCAAGTGATGAGGTGGACAGAATGGTTAAAGAAGCAGAGAGGTTTGCAAAGGAAGACAAGGAGAAGAGGGATGCCATAGACACAAAGAACCAAGCAGATTCTGTTGTGTACCAAACTGAAAAACAGCTAAAGGAGCTGGGAGACAAAATTCCCACCTCGGTTCGAGATACCGTTGAGGCTAAGCTCAAAGAACTTAAGGATGCCATCTCTAATGGGTCAACTGAAACTATCAAAAACTCCATGGCTGCACTGAATCAAGAAGTAATGCAGATGGGGCAGTCCCTCTATAGCCAGGCAACGGCCTCGAGCGATGGGACTGCGTCAGGAACTCAGTCTACTTCATCAGGATCAGCTGGAGATACTGATGGGGATGTGGTTGATGCAGATTTTGTGGATAGTGACCACGATCGTCTCTCTTCTGCTTCACCGTTCTTACCTTGGACCTCTTCATCTTCTTCTCCGGCGAACGCACAAGGTGCTCCGGCGTCTTCTCCTTGCGCGCAAGCCTTTTGCAGACGGGGACCAGACCAGGTAGCATCTGCTTCTAGTGTCTGTTTTGTATCTTTTAAGATGCTTCCTCTTTCGCTCCTAAAGACTGCTCAAGGTCACCCAATGTTGGTGGAGTTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCAAAAGATGGCGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAGCCAAAAGCCGTGCAGATAGGAAACCTCCAGTGTTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCAGCCAAAGGAATGGGCCGAGGCTTTGATGATGGTGCCAAAGCTGCTTCTGGAGGCCGTGGAAAAGGTGGCCCTGGTGGAAAACCTGGTGGCAACAGAGGGGCCGAGGGTGATTGGAATGATATCGGTAACCAATGGGATGGACCCAACTACATATGCAAGCGCTGCCCAGTTTTCTCGTCAGCAGCCTTTTGGGAATATTGGTATGTAGATAATTTCATGTTTTCAGATGTTTCAGAGGGGCTTGGGAGGCGGCAATGTGAGACAAATTTAGGTGCACAGAATAATTGGAAGTTGCTACGATCGAAGTCTAAACTCCTGTTGATTAGGACTGTTTCTTTCTTATCGACTTCCCAAACATGTCCATTTCTTTCTTATGGACTTATTGATCTGCCCAGCACATAA 2931 47.97 MAFSSTVASQLHVFRTSNLRFPDSNKSWNRRRRSTAVSVIRCEKVVGIDLGTTNSAVAAMEGGQPTIVTNAEGQRTTPSVVAYTRNGDRLVGQLAKRQAVVNPENTFFSVKRFIGRKMAEVDEEAKQVSYKVIADENGNVKLDCPAVGKQFAAEEISAQVLRKLVDDASKFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFDKKTNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATSDGPKHIDTTLTRVKFEELCSDLLDRLRSPVETALKDAKLSFKDIDEVILVGGSTRIPAVQELVKKMTGKEPNMTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVCQGEREFVRDNKSLGRILLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVDRMVKEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKIPTSVRDTVEAKLKELKDAISNGSTETIKNSMAALNQEVMQMGQSLYSQATASSDGTASGTQSTSSGSAGDTDGDVVDADFVDSDHDRLSSASPFLPWTSSSSSPANAQGAPASSPCAQAFCRRGPDQVASASSVCFVSFKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEAKSRADRKPPVLGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGGNRGAEGDWNDIGNQWDGPNYICKRCPVFSSAAFWEYWYVDNFMFSDVSEGLGRRQCETNLGAQNNWKLLRSKSKLLLIRTVSFLSTSQTCPFLSYGLIDLPST 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9627176 9638347 + CcPI632755_09g010080.1 Cco09g1008 187465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1008 976 MobiDBLite consensus disorder prediction 639 663 - -
Cco09g1008 976 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Cco09g1008 976 Gene3D - 221 402 - -
Cco09g1008 976 Pfam Hsp70 protein 45 639 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cco09g1008 976 SUPERFAMILY Actin-like ATPase domain 44 224 IPR043129 -
Cco09g1008 976 ProSitePatterns Heat shock hsp70 proteins family signature 1. 48 55 IPR018181 -
Cco09g1008 976 MobiDBLite consensus disorder prediction 639 702 - -
Cco09g1008 976 ProSiteProfiles Sm domain profile. 735 808 IPR047575 GO:0003723(InterPro)
Cco09g1008 976 Gene3D - 543 643 IPR029048 -
Cco09g1008 976 FunFam Chaperone protein DnaK HSP70 414 597 - -
Cco09g1008 976 Gene3D - 46 415 - -
Cco09g1008 976 SUPERFAMILY Sm-like ribonucleoproteins 736 854 IPR010920 -
Cco09g1008 976 Coils Coil 288 315 - -
Cco09g1008 976 FunFam Molecular chaperone DnaK 265 352 - -
Cco09g1008 976 CDD LSm4 735 810 IPR034101 GO:0000398(InterPro)|GO:0000956(InterPro)
Cco09g1008 976 CDD HSPA9-Ssq1-like_NBD 42 418 - -
Cco09g1008 976 FunFam Molecular chaperone DnaK 543 644 - -
Cco09g1008 976 FunFam Molecular chaperone DnaK 46 232 - -
Cco09g1008 976 NCBIfam molecular chaperone DnaK 44 639 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cco09g1008 976 SUPERFAMILY Actin-like ATPase domain 227 418 IPR043129 -
Cco09g1008 976 ProSitePatterns Heat shock hsp70 proteins family signature 2. 232 245 IPR018181 -
Cco09g1008 976 SMART Sm3 738 804 IPR001163 -
Cco09g1008 976 Pfam LSM domain 739 803 IPR001163 -
Cco09g1008 976 MobiDBLite consensus disorder prediction 814 842 - -
Cco09g1008 976 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 420 576 IPR029047 -
Cco09g1008 976 Gene3D - 734 816 - -
Cco09g1008 976 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 416 541 IPR029047 -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 424 443 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 505 521 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 179 199 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 238 248 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 401 421 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 95 103 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 44 57 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 72 84 - -
Cco09g1008 976 PRINTS 70kDa heat shock protein signature 370 386 - -
Cco09g1008 976 Gene3D Actin; Chain A, domain 4 265 352 - -
Cco09g1008 976 MobiDBLite consensus disorder prediction 814 882 - -
Cco09g1008 976 PANTHER HEAT SHOCK PROTEIN 70KDA 45 608 IPR013126 GO:0005524(InterPro)|GO:0009507(PANTHER)|GO:0140662(InterPro)
Cco09g1008 976 MobiDBLite consensus disorder prediction 685 702 - -
Cco09g1008 976 Hamap Chaperone protein DnaK [dnaK]. 42 676 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cco09g1008 976 FunFam U6 snRNA-associated Sm-like protein LSm4 734 816 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1114 Cco-Chr6:17122971 Cco09g1008 Cco-Chr9:9627176 9.60E-304 dispersed
Cco09g1008 Cco-Chr9:9627176 Cco10g0954 Cco-Chr10:20739044 1.10E-183 dispersed
Cco09g1008 Cco-Chr9:9627176 Cco09g2190 Cco-Chr9:36255452 1.70E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1008 K03283 - csv:101212307 1188.33