Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1012 ATGGCGCCACTGAATTCGAAAAATTCGCAACTGTCACCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCACTCTCCTCCTTTTCTTCACACACGAAATCCGGATCCATCTCCAATGAAGAAACCAAATCAGTAGCTTTAATCGGCAATCGCAATCCCTCTCATTTCCGCACTGTGGACATGGATGCTAAGTTCGATACTTCATCTTCTGCTTCTAAAACTGTGGACGATCTTTGGAGGGAGTTGAAGGAGGAGGCTGTTGGAGAGATGATATTGGACGGTTTTCTTCAAGCCAAACCACAGGATCAGGATGTGAGGATTTTGAATCCATTTAGTTGTTTAAAGGATTTCGATAGGGTTTATGTTGAAGAAGAGACTGTTGGATTTGGGAATGGAGTTGACATTAGTGGGAGAGGGAAGAGAAGGCGCGCAGCTATGGAACCAATGGATGAAGCTGCACTGCAAAGACAACGGAGGATGATTAAGAACAGGGAGTCTGCCGCTAGGTCCAGAGAAAGGATACAAGCACATCAAGTTGAGTTAGAGTTAATAGCTTCGAGACTTGAGGAAGAGAACGAGCGATTATTGAAAGAGAAGGCCGAGAGATCTAAGGAACGACTAAAGCAGTTGTGGAGAAACAAAGACTGCCACGTGTCATATGCTGGGGTCACTCCTTCGAGTGGTAGCCTTTCTATCATTCTTGAGACAGGAGAAGCGAAAGAGCATTTTGAACTAAAGATCAACCCAACAAGAGATGATGATCCTTCCTCGACCTTTGAACTTCAGTTAGCCAAAGGCACTGCCACTCCTTTTTTCTGCTCTAATGAAACCAATTCCATGTTCATTCTCACTGCCAAACTCACAGGCTTTGCAGCAGATGACATTGTGATAACTATTAATGGAAGCGGTACTCGGATTGAGATTGGCTGGGGAAAACTTGTTCAGAAAGTGGAGATTACGGGAAGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATTTTTCGAATTCCGGATGGTGTGGTTTTGGACGAAATCAAGGCAACGTATAATGACAAAGAATCGGTTTTGAAGATTTCGATGCCGAAATTGGTGGATGGAATGCTTGGGGTAGGAATTGAAGAAGTGAAGGAACAGGAAGCTGGTGAAGCCACATTCGGATCTCAGGATTATCAAGAGGAGCTGCTTGAGACTCTGGAAACTGGCAGAAAGACCAATTTGGTTGATGATAATCATGAAAAGGAGGAAGACGATGCTGCTAATGGAGAAGTTGAAGAAGAAAATGATGGGCCCGAAGCATGTCATGAGAGAGAATATGTAGCAGAAATGCCGCCAGAAGAGATCAAGAAGTTGAAGGGCAATGAGATGGATCAAGATATTGATGGAGAATCCAATGATGACTACTCTGAAAGGAAACAGACAGTAAAAGTAGCAACAAAAACTACGGAGTATGAGGCCACAAGAGAAAATGTTAATGGAGAAATCAAGGTTCCCAGGGTTAGGAGTACGGAAGGGATAGATGTGGCTGAAGGAACAGCCAACCATCAAAAAGAAAAACGACTTGATGCTGGAGCATGTAATGGTGATAAAGCAACCCTGATAAATAAGAAACCATATGTCAAGACACAATCAAAAGCTTCTATGGATCGAGAGGCACAAGTATTAGACCGTGGACTTTCGCAGCCAAATCGACTGACTCAAGCAGAACCGGGGACGCAGGAAACATACAAAAACATTTGGGAATTGAAAGAGCTTGAAACAGATAAAGGAAGTCCATATTTGCAAAGCCCTGCACATCAGCACGAAGGAAAAGGAGTTGATAAAAAAGGAAGTTCCCAAACAAAAGATGAAATTAAGGACGCAAGAGAAGAATGCAAGTCAACACATGAAGATTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGTACTCCAATCATCATTGCAGGGTCAGCGCTTCTCGCATCCCTTGCAATTGTTGTGTTTAACTTAATGAAAAGTAAAAGACGAGAGAAAAATATGAGAGGACGCGGTCGAAATAATGTAAATGGCCAGTTGCTGATATTATCACCACGTGGAACCTTCAAATGGGCTTCAATTTTCCAGCAGCCAGCAGCCAGGAACCGGAATCGACTTAAGCACATGGCGCTCTCTCCTTCTGCTGACACAAACATTGTTTTAGTTTTCACATGGCATGGATCCAGAGACTGA 2238 43.3 MAPLNSKNSQLSPPPPPPPPSSSSLSSFSSHTKSGSISNEETKSVALIGNRNPSHFRTVDMDAKFDTSSSASKTVDDLWRELKEEAVGEMILDGFLQAKPQDQDVRILNPFSCLKDFDRVYVEEETVGFGNGVDISGRGKRRRAAMEPMDEAALQRQRRMIKNRESAARSRERIQAHQVELELIASRLEEENERLLKEKAERSKERLKQLWRNKDCHVSYAGVTPSSGSLSIILETGEAKEHFELKINPTRDDDPSSTFELQLAKGTATPFFCSNETNSMFILTAKLTGFAADDIVITINGSGTRIEIGWGKLVQKVEITGRTYKKETETRRFKKIFRIPDGVVLDEIKATYNDKESVLKISMPKLVDGMLGVGIEEVKEQEAGEATFGSQDYQEELLETLETGRKTNLVDDNHEKEEDDAANGEVEEENDGPEACHEREYVAEMPPEEIKKLKGNEMDQDIDGESNDDYSERKQTVKVATKTTEYEATRENVNGEIKVPRVRSTEGIDVAEGTANHQKEKRLDAGACNGDKATLINKKPYVKTQSKASMDREAQVLDRGLSQPNRLTQAEPGTQETYKNIWELKELETDKGSPYLQSPAHQHEGKGVDKKGSSQTKDEIKDAREECKSTHEDSSKEAKQEKKQDSKQFKMRTPIIIAGSALLASLAIVVFNLMKSKRREKNMRGRGRNNVNGQLLILSPRGTFKWASIFQQPAARNRNRLKHMALSPSADTNIVLVFTWHGSRD 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9660446 9668763 + CcPI632755_09g010120.1 Cco09g1012 187469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1012 745 MobiDBLite consensus disorder prediction 405 436 - -
Cco09g1012 745 MobiDBLite consensus disorder prediction 558 577 - -
Cco09g1012 745 Pfam Hsp20/alpha crystallin family 276 366 IPR002068 -
Cco09g1012 745 Gene3D - 239 369 IPR008978 -
Cco09g1012 745 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 54 211 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cco09g1012 745 MobiDBLite consensus disorder prediction 561 576 - -
Cco09g1012 745 SUPERFAMILY HSP20-like chaperones 258 366 IPR008978 -
Cco09g1012 745 MobiDBLite consensus disorder prediction 592 648 - -
Cco09g1012 745 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 262 381 IPR002068 -
Cco09g1012 745 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 158 173 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1012 745 Pfam bZIP transcription factor 151 210 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1012 745 MobiDBLite consensus disorder prediction 24 49 - -
Cco09g1012 745 SUPERFAMILY Leucine zipper domain 155 205 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1012 745 MobiDBLite consensus disorder prediction 456 475 - -
Cco09g1012 745 CDD ACD_sHsps-like 275 365 - -
Cco09g1012 745 MobiDBLite consensus disorder prediction 405 420 - -
Cco09g1012 745 Gene3D - 154 210 - -
Cco09g1012 745 MobiDBLite consensus disorder prediction 9 23 - -
Cco09g1012 745 MobiDBLite consensus disorder prediction 603 648 - -
Cco09g1012 745 SMART brlzneu 151 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1012 745 MobiDBLite consensus disorder prediction 1 49 - -
Cco09g1012 745 CDD bZIP_plant_BZIP46 155 201 - -
Cco09g1012 745 Coils Coil 171 210 - -
Cco09g1012 745 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 153 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1012 Cco-Chr9:9660446 Cco09g1567 Cco-Chr9:23511121 1.30E-11 dispersed
Cco09g1012 Cco-Chr9:9660446 Cco10g1890 Cco-Chr10:32477112 6.50E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59949 PF00011 HSP20 3.60E-07 CL0190 Cco TF