Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1035 ATGATAAAGCAAGCGCACTCAGTGATTCAAATTCCCAACGAAACCCAATTCATCGGATTCAAAAGCATTGGCGGAGTCAGATTCTGTTTGTCGTCGATCCTTCAATCCTCCGCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGCAACCACCATCGCCGGCCTCCCATGGCCGCCTCCGCCGCCGCCGCGGATAACCCATCATCCACCTCTTCATCCTCCTCCAAGCCTTTCATTTTCTCCCCCGATCCTCCCCCTAAACTTCCTCTCACACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTTCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGTATCTGATATGAAAAGAAGTTGCTCTGTGGCACTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCGAGGGGTTATATCAATGCAAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCTACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTATCTCTAAATGGATAAAATCTTCCAACTCCTCTCTTATACTGCGCCATTTGGAGGTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGCTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTGCTGGAGACATGTCTGCTTTAGATCTTGTCAGTACCATTGCGACATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACTATTGTTGATGAACTAGAAGACCTTCTATCTGTTCCACAGTAG 1194 44.39 MIKQAHSVIQIPNETQFIGFKSIGGVRFCLSSILQSSAFQIRPLGNLTSTRSRNHHRRPPMAASAAAADNPSSTSSSSSKPFIFSPDPPPKLPLTPHQIKLCSEALEAFREKLQMPDVINQEFARLQAKRITVSDMKRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVISKWIKSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVSTIATFRSQRIGMVQTLDQYFFCYRTIVDELEDLLSVPQ 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9920645 9926296 + CcPI632755_09g010350.1 Cco09g1035 187492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1035 397 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 304 379 IPR000387 GO:0016311(InterPro)
Cco09g1035 397 ProSitePatterns Tyrosine specific protein phosphatases active site. 325 335 IPR016130 GO:0016311(InterPro)
Cco09g1035 397 ProSiteProfiles PTP type protein phosphatase domain profile. 119 388 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 FunFam Tyrosine-protein phosphatase non-receptor type 12 96 395 - -
Cco09g1035 397 MobiDBLite consensus disorder prediction 67 82 - -
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 197 217 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 355 370 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 284 301 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 179 186 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 322 340 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PRINTS Protein tyrosine phosphatase signature 371 381 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 58 389 IPR050348 GO:0004725(PANTHER)
Cco09g1035 397 Gene3D Protein tyrosine phosphatase superfamily 95 394 IPR029021 -
Cco09g1035 397 MobiDBLite consensus disorder prediction 48 89 - -
Cco09g1035 397 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 95 391 IPR029021 -
Cco09g1035 397 Pfam Protein-tyrosine phosphatase 148 386 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 SMART ptp_7 285 387 IPR003595 -
Cco09g1035 397 SMART PTPc_3 118 390 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Cco09g1035 397 CDD PTPc_plant_PTP1 180 382 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1035 - - - 0.0