Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1040 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATAGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTATTCCTGCAGGCGGGCAGCTGGGGCAGCTCGACCAAGTTCTTTTCGTGTCTGCACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACTGTTGAAGAACAGGAATCAAAGGATGAAGAAGACGCAGATGAAAATGAGAACCTTCCACCCGGTTCATATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCCGCCCTTGCAAAGCCAAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAGTCGAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACACTATGAAACAACGAATAAGCTTGGGAACATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGGCCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACATCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 1530 43.46 MDPEDSLCSSEVWTKSSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAIPAGGQLGQLDQVLFVSAPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEQESKDEEDADENENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGEHYETTNKLGNINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYIQKSGAESSS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9970606 9972135 - CcPI632755_09g010400.1 Cco09g1040 187497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1040 509 SMART c2h2final6 309 342 IPR013087 -
Cco09g1040 509 SMART c2h2final6 260 282 IPR013087 -
Cco09g1040 509 SMART c2h2final6 347 369 IPR013087 -
Cco09g1040 509 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Cco09g1040 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 492 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cco09g1040 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Cco09g1040 509 MobiDBLite consensus disorder prediction 224 238 - -
Cco09g1040 509 MobiDBLite consensus disorder prediction 9 25 - -
Cco09g1040 509 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Cco09g1040 509 Gene3D Classic Zinc Finger 244 315 - -
Cco09g1040 509 MobiDBLite consensus disorder prediction 1 25 - -
Cco09g1040 509 MobiDBLite consensus disorder prediction 186 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1528 Cco-Chr1:27681642 Cco09g1040 Cco-Chr9:9970606 1.20E-60 dispersed
Cco04g1633 Cco-Chr4:31631374 Cco09g1040 Cco-Chr9:9970606 2.10E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59950 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1040 - - - 0.0