Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1048 | ATGGCGGACGTGATGCTGATGAAGGAGATTGAGGAAACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTTCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTTTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGGGTCATTAAGGATGATGGTCTATGGATGCCTGTTGATCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTATGGCACTCCCCAGGAGGCTGAGCTTGCCAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTATCCCATACACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATCCGTGCTGGTTCTGATACTGAGGTTTTCTGGAATGATGCTCGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCGTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGCACCTTTAACCGTCTGATGCGTTTCGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATCGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGACCCCATTATTGCACTGTTTGTTCCTGAGTTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATACCAATTGAAGTGCTGGAGCTTGAGAATAAGAACGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGATTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATAGAATCTTGAAGGATCATTTCTTCCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCGGAAAAAGAGGAAGAGATAGCAAAGAACTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAGGAGCGTGAGAAACGGAAAGCATTGAAGGACGAGTGGGACAAGTGGGTGAATGAATGGAAAAGATTGCATGAAGAAGAGAAGTTGTTGAGGCAGAAGCTGCGAGATGGTGAAGCCAGTGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGACGTGTCGGAGGAAGTTTTGTCGTTTGATTTTGGGCAGTAA | 2157 | 44.83 | MADVMLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEIIPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQ | 718 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10024643 | 10028922 | + | CcPI632755_09g010480.1 | Cco09g1048 | 187505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1048 | 718 | Gene3D | - | 441 | 620 | IPR015943 | GO:0005515(InterPro) | |
Cco09g1048 | 718 | Gene3D | - | 181 | 440 | IPR015943 | GO:0005515(InterPro) | |
Cco09g1048 | 718 | SUPERFAMILY | DPP6 N-terminal domain-like | 217 | 600 | - | - | |
Cco09g1048 | 718 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 411 | 626 | - | - | |
Cco09g1048 | 718 | Pfam | Eukaryotic translation initiation factor eIF2A | 406 | 606 | IPR013979 | - | |
Cco09g1048 | 718 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723(InterPro) | |
Cco09g1048 | 718 | SUPERFAMILY | RNA-binding domain, RBD | 58 | 141 | IPR035979 | GO:0003676(InterPro) | |
Cco09g1048 | 718 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 181 | 382 | - | - | |
Cco09g1048 | 718 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 55 | 154 | - | - | |
Cco09g1048 | 718 | CDD | RRM_eIF3B | 59 | 143 | IPR034363 | - | |
Cco09g1048 | 718 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 48 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cco09g1048 | 718 | Gene3D | - | 55 | 154 | IPR012677 | - | |
Cco09g1048 | 718 | SMART | rrm1_1 | 61 | 143 | IPR000504 | GO:0003723(InterPro) | |
Cco09g1048 | 718 | Coils | Coil | 687 | 707 | - | - | |
Cco09g1048 | 718 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 31 | 708 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cco09g1048 | 718 | Pfam | RNA recognition motif | 82 | 136 | IPR000504 | GO:0003723(InterPro) | |
Cco09g1048 | 718 | PIRSF | Transl_init_eIF3b | 7 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g1048 | Cco-Chr9:10024643 | Cco09g1053 | Cco-Chr9:10051283 | 0.00E+00 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1048 | K03253 | - | csv:101213144 | 1436.78 |