Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1048 ATGGCGGACGTGATGCTGATGAAGGAGATTGAGGAAACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTTCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTTTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGGGTCATTAAGGATGATGGTCTATGGATGCCTGTTGATCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTATGGCACTCCCCAGGAGGCTGAGCTTGCCAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTATCCCATACACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATCCGTGCTGGTTCTGATACTGAGGTTTTCTGGAATGATGCTCGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCGTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGCACCTTTAACCGTCTGATGCGTTTCGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATCGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGACCCCATTATTGCACTGTTTGTTCCTGAGTTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATACCAATTGAAGTGCTGGAGCTTGAGAATAAGAACGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGATTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATAGAATCTTGAAGGATCATTTCTTCCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCGGAAAAAGAGGAAGAGATAGCAAAGAACTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAGGAGCGTGAGAAACGGAAAGCATTGAAGGACGAGTGGGACAAGTGGGTGAATGAATGGAAAAGATTGCATGAAGAAGAGAAGTTGTTGAGGCAGAAGCTGCGAGATGGTGAAGCCAGTGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGACGTGTCGGAGGAAGTTTTGTCGTTTGATTTTGGGCAGTAA 2157 44.83 MADVMLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEIIPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQ 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10024643 10028922 + CcPI632755_09g010480.1 Cco09g1048 187505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1048 718 Gene3D - 441 620 IPR015943 GO:0005515(InterPro)
Cco09g1048 718 Gene3D - 181 440 IPR015943 GO:0005515(InterPro)
Cco09g1048 718 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cco09g1048 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Cco09g1048 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cco09g1048 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Cco09g1048 718 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676(InterPro)
Cco09g1048 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Cco09g1048 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Cco09g1048 718 CDD RRM_eIF3B 59 143 IPR034363 -
Cco09g1048 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cco09g1048 718 Gene3D - 55 154 IPR012677 -
Cco09g1048 718 SMART rrm1_1 61 143 IPR000504 GO:0003723(InterPro)
Cco09g1048 718 Coils Coil 687 707 - -
Cco09g1048 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 31 708 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cco09g1048 718 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
Cco09g1048 718 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1048 Cco-Chr9:10024643 Cco09g1053 Cco-Chr9:10051283 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1048 K03253 - csv:101213144 1436.78