Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1069 ATGAAAACAGAAATGGCTCAAAAAACCAACTCTTCTCTCTGCTCTGTTCCACTTCTGTTTCTCCTCATTCTTCTTTTAACCCTCTCTTTCTCCCTCTTCCTCCTCTTCACTCCATCTTCCAACCCCAACCATTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTTCAATCCAAACATCTCTCCTTCTTCACACCAATCCATCAAAGTCTACATTGCAGACCTTCCCAGATCCCTCAACTATGGCCTTCTTGATCAGTATTGGGCCATCCAGTCCGATTCCAGGCTCGGCAGCGACGCAGATCGTGAAATTAGATCGACCCAGATGAAGAAAACCCTCGAATTCCCTCCATATCCTGAGAACCCATTGATCAAGCAGTACAGTGCGGAGTATTGGATTTTGGGGGATTTGATGACGCCACCGTCGCAGAGGGATGGATCTTTTGCCAAGAGGGTTTTTGTGGCTGAGGAAGCCGATGTGGTTTTTGTGCCATTTTTCGCGACCATGAGTGCTGAAATGCAGTTGGAAGTGGCGAAGGGTGCGTTCAGGAAGAAGGTGGGGAATGAGGACTATGAACGGCAGAGGAGTGTGATGGATTTTCTTAAGAGTACTGATGCTTGGAAGAAGTCTGGTGGGAGAGACCATGTTTTTGTTCTCACTGACCCAGTTGCGATGTGGCATGTCAAAGCTGAGATAGCTCCGGCTGTTCTGCTTGTGGTCGATTTTGGCGGTTGGTTCAGGCTTGACGCAAAATCATCTAACAGTTCCTCGCCAGATATGATTCAGCACACTCAAGTTTCAGTACTTAAGGATGTGATTGTTCCATATACCCATTTACTACCTAGGCTGCACTTATCAGAAAACAAGAAGCGCCAGACCTTACTTTATTTCAAAGGGGCGAAACATAGGCATCGGGGAGGACTGATCAGGGAGAAACTCTGGGACTTGCTGACTAATGAGCCTGATGTTATAATGGAAGAAGGGTTCCCGAATGCTACAGGTAAGGAGCAATCTATCAGAGGGATGAGATCATCAGAATTCTGCTTGCACCCAGCTGGGGATACCCCAACATCCTGCCGTCTTTTCGACGCCATCCAAAGTCTCTGTATACCTGTGGTTGTGAGTGACAACATCGAGCTTCCATTTGAAGGCATGGTGGATTACTCAGAATTCTCTGTTTTTGTGGCTGTCAGTGATGCATTGAAACCAAACTGGCTTGTAAAGCACCTTAGAATCATACCAGAAGAGCAAAGGAACAGACTTCGGCAATATATGGCTCGGGTTCAACCTGTTTTCGAGTACGACAATGGCCATCTGGGAGGTATTGGACCAGTTCCTCCAGATGGTGCTGTAAATCACATATGGAGAAAAGTCCACCAAAAGCTGCCTATGATAAAAGAAGCCATTGCTAGGGAGAGAAGAAAACCAGAGGGTGTGTCAGTTCCTCTTCGCTGCCATTGTACTTAA 1464 46.45 MKTEMAQKTNSSLCSVPLLFLLILLLTLSFSLFLLFTPSSNPNHSSSSSSSSSLFNPNISPSSHQSIKVYIADLPRSLNYGLLDQYWAIQSDSRLGSDADREIRSTQMKKTLEFPPYPENPLIKQYSAEYWILGDLMTPPSQRDGSFAKRVFVAEEADVVFVPFFATMSAEMQLEVAKGAFRKKVGNEDYERQRSVMDFLKSTDAWKKSGGRDHVFVLTDPVAMWHVKAEIAPAVLLVVDFGGWFRLDAKSSNSSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSENKKRQTLLYFKGAKHRHRGGLIREKLWDLLTNEPDVIMEEGFPNATGKEQSIRGMRSSEFCLHPAGDTPTSCRLFDAIQSLCIPVVVSDNIELPFEGMVDYSEFSVFVAVSDALKPNWLVKHLRIIPEEQRNRLRQYMARVQPVFEYDNGHLGGIGPVPPDGAVNHIWRKVHQKLPMIKEAIARERRKPEGVSVPLRCHCT 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10212505 10215925 + CcPI632755_09g010690.1 Cco09g1069 187526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1069 487 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 54 459 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Cco09g1069 487 Pfam Exostosin family 65 408 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1069 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1024 Cco-Chr1:13072609 Cco09g1069 Cco-Chr9:10212505 5.20E-70 dispersed
Cco01g1815 Cco-Chr1:30788919 Cco09g1069 Cco-Chr9:10212505 3.90E-53 dispersed
Cco02g1566 Cco-Chr2:28330124 Cco09g1069 Cco-Chr9:10212505 7.50E-56 dispersed
Cco09g1069 Cco-Chr9:10212505 Cco10g0746 Cco-Chr10:11290150 1.40E-11 dispersed
Cco09g1069 Cco-Chr9:10212505 Cco08g1162 Cco-Chr8:23416550 2.10E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1302 . . . . . . . . . . . Cma09g01168 . . . Cpe06g00920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00784 . Sed10g1782 . Cmo09g01168 . . . Car09g01044 . . Bhi09g01618 Tan01g2956 Cmetu01g2252 . . Mch11g1579 . Cla09g00995 Cam09g1053 Cec09g1054 Cco09g1069 . . Cre09g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010824 0 1 1 3 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 2 32