Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1071 ATGTGCCATTATTGTGGTGCTGTGACAACAGACTCAGATGGCAAAAAATTGGAAAATGGTAGTTCTGTTAGATTGGATGATGCAGGCCCCGCGTGTTTATGTAAGGTTTGCAAAGAGAATCAGGGGCAAGAAATGATGAACTCAGATAATAGAAGTATGAGCGTCGCACCGATGTTAAGTCCAATGCCTTCACTGTCAAGCTGCAATAGTTGGGTTTCAGCTAATTGTGATTGTTCAACAGTGGCAAATTTAGATATCAGGGATGGCCAAGAAGGTGCAACAGGAAGTAGCCAAGAAGATATCGATTGTAGGCAAGAAATGATGTCACATAACTTGAGTGAAGTAGTTCATAGCAATGATCAACTCAGTGGAAGAGACGATGAAAGTGTAACGTCAATTAGTCAAGAGGCAACTCACAATGGCTCTGGCGTTCCTGTCAGTGCGGAAATTGAGCAATCCCATTCTAATTGGATGGATACTGATCTGTGGGATCCTCCAGAGCCAGAGGACCCAGAGGATCACATGGAGGGTGGGATGGGTTATAACGACGATGATGATGACGAGTTTGGTGATACCACAGAATGGAGCACCTCAAGTTCCTTTGGTCGCACTGTGGATGAAGCCAGTGTTAGCTATAGGTTTAAAGAGGAAAAACAAAGGGCAATGCAACAGGTTATGAATGGGAAGTACAAGGTTTTCATACGCCATCTTCTTAAATTAGTAGGTGTTGCTGCCTCATCAGGGGAGAATAGTGAAAATTGGGTGGATATAGTTTCTTCTTTGTCTTGGGAAGCTGCCACATTTTTAAAGCCTGTAGTAAATGGTAAAGCGACGAATCCAGAAGATCATGTAAAAGTGAAGTGCATTGCAACTGGAACTCCAAACCAAAGTCAATTTATCAAGGGCATGGTATTCAAGAAGCATGCAGCTCACAAACACATGCCAACGCATTGTAAGAACCCGAAGTTAATACTGATTCAAGGCATGCTTGGTGAGGCTCCAATAAGTAGACTGTCTTCATTTAATTCAATGGATCAGGAAAATGATTTTACGAATCATGTTATAGAGATGATTGAAGGTTGCACTGCGAATGTGATTTTAGTTGAAAAAACTGCAGCACGAGTTATCCAAGAAGCAATTCTCAAGAAAGGCATGACATTAGTGCTTGATATGAAGCTCCACCGTCTGGAGAGAATAGCTCTTTGTACCGGTTCACCAATTTTAACATCTGAAACTTTAATGAGCCAAAAGACAAGACAATGTGATGCTGTTTATTTTCAAAAAATTGTAGAAGAACATGCTGGTGTTTTGGAGGGAGGAAAGATGCCAACTAAAACTTTAATGTTTATTGAGGGCTGTCCTACACGTTTGGGTTGTACGATTTTGCTGAAAGGAGCTCACAGTGATGAACTGAAGAGGGTTAAGTTTGTTGTGCAGTGTGCCGTTGTAATGGCATTTCACTTAATATTAGAGACTTCTTTCCTTGTTGATCAGCGAGCTATGTTTGCAACTATTCCATTTGGTGGAGTACCAGCTATTTCATCTGATCCACAAGCACCTTTAGAGCCTTGTAGCCTAAGTGTACGTCAAGCTGAAAATTCAAGTGATAAAAGTGAACAACCGACTGACTCAATGAATGTTTATATTTCAAATGGATCCCATGAGGAGGCATCTAACGGATCAAACCTGGAGTCAGTGGAAAAGCTAATGTCCTCTGAACCAGAACCATATAATCCTGCCATATTTTCTGGATTCTCATCCATTTCTGATTCGTTAAAGAGAGTGATGGGAGAAAGTTTCCTTTTATCCTCTCCCTATCAATCATTGTCTTCTTATTTTGGACATGGGATTGACCTGAGTGGCTTGGTTGCCAAGTCTGACTCAGTTTCATCTACTCCACAGGCAGCTTATCAGTTTGATGTGGAAGTTAGGGGTAGTTCTGAAGAAGAGAATTCAGTTCATGAACAGTCTGTGTCACATCAATCAACCTTGGAAGGCCTTGGATTCCATGAAACTGCTCCCAACTATTCTGAAGACACAATGCAGAAGAAAACGTCATTGGATTCTCAGAGTATTTTGGTTTTGATGTCGAGCCGAAATGCTTTGAAAGGAACCATGTGTGAGCAGAGCCATTTTTCACATATTGTGTTCTACAAGAATTTTGATGTTCCTCTTGGAAAATTTTTACAAGAAAATTTACTAAATCAGAAGAATCTCTGCACTGTCTGTGGTGAACTGCCGGAAGCTCACTTTTACTATTACGCACACTATCGAAAGCAGCTTTCCATTCAAGTCAAACAGCTTCCACTGGATAAAGTTTTGCCAGGTGAAACAGAAGGAAAACTTTGGATGTGGAGTCGTTGCAGTAAATGTAAATCTAAGGGAGGACCTTCAAAGTCCACAAAAAGGGTGCTGATCTCTACAGCCGCACGTGGCTTATCATTTGGGAAGTTTTTGGAACTTTGTTTCTCTGATGACACTTTACCTAGTAAATCATCAGTTTGTGGCCATTCATTGTTTGGGGACTTCCTCTACTTCTTCGGACTGGGCAATATGGTTGCTATGTTCAGATACTCTGAGGTAGCAATTTATACGGTCTCTATGCCTCCTCAGAAACTGGAGTTCAGCAGTTCAATGAGACAAGGTCATCTCATCAGAGAAACTGAAAATGTTTACACGAAGGGGATGGTACTTTTCACTGAGATTGCGCATTCTCTGAAGAAGATCATATCTGAACGTAAAAGTTCAAATGTAAACCACCCTCAAGGCTTTCTCAATGACTTTTCTTTGGTTGAAGAAATGTTAAACGAAGAAAGATCAGAATTTGAGGTAAATATTCAAAATTCTCTTTCTAAGAAAGGAAACCTGGACTTCGCTTTTCACAAATATCTCAATCTGAATCGTTTGCTCTGGGACCTGCTGCTAGAATCATGTATTTGGGATAGACGCCTGCAATCGTTAATGTCATTGGGTGTTACAACAAACTCTGGCACCTCTGAAAATGTTGAGCCAGAATCAGTTATGTTGAAGATGAATAGCAACATTGATGTTGGACCTGAGGGATCGGAATCAATTGTAGAAAATGATGATACAAAAGTTCAGCAAGATATGTCCGTGGATGAAAATGTATTACCTCTGAAAGAAATTGCAGTTGAAGGTTCGGATGGAGAGTCCGGTGGTGATGGACTTAATTTACCTTTGGCGAATGAAGTCACAGAGATACCGATTATGGATGATTTGAGCCCCAAGAAACTTTCTCGCCAAGGGTCTTTGTCAAATGGCTTTGACCGTCACCATTCAGATTATGAGGATGCTCAAGTAGGAAGTGTTCTGTCATCTGGTGATTTGCATGTAGATAGGACCATTCCAATTTCAACAGGTGATTCGACCCTCAGCAAATTGTTCTGGACCCCTTTTTCGGAGATCCGGCAGATGAACATGAGGGACATCCAGAGAAGCTACTTTCCGGAACTCAAGTCCATCAGTAGCTATACTCCAAAACTCTTGCCCGCAGCCGCTGACTTCATCCACGAAGAAGGACAGAAGCTACACATTCTTCTTGCAAATGATAATTTTATTGTTTCAGACTATGAGGGTGAACTCTCGAGCATAGTTGCTTGTGTACTTGCTCTGTTGAAAGATCTACCCTGTCAAACAGATTCTCATAATGAGGATAGTAAGGGAGAGGGTGAAGGTGTTTTACAAGCAGCTTTGAGTTCACGAAGCCTAAATAAAGTTACCTCCAATGGATCCTCAGATTCAGACTCGAGCATCTCTTCAGAAGAATATCGGTTCTCAAGTTTTGACAGGTTAAATTTGTTGGATTCTCTTGTTCCAGAGACTTTCAAGCGAGCAGATCATGAAGGGGTCATAAAGTCACTAGCAAAGGGAAAATATCTTGTGAATTGTCCATATTTCAATCAGTTCCGTGATCTTCGAAGTCGATGCTGCCCATCAGAGCTCCATTACATAGCTTCCTTAAGCCGTTGTATAAACTGGAATGCAAAAGGTGGGAAAAGCAAATCTTTTTTCGCCAAGACACTTGATGACAGGTTCATTATAAAAGAAATTAAAAGGACGGAATATGATTCATTTATGAAGTTCGCTCCTGAGTATTTCAAGTACATTAATGAATCATTTGACATGGGGAACCAGACCTGCCTTGCTAAGGTTCTTGGAATCTATCAGGTAACGGTGAGGGAGCCGAAGAGTGGGAAAGAGATGAGACATGATTTGATGGTTATGGAGAATCTCAGTTTTGGTCGCAACATTATTCGCCAATATGATCTTAAAGGAGCTCTACATGCTCGATTCAATCCAGCTACCAACAATTTTGGTGAAGTCCTCTTAGATCAGAACTTTGTGAATGACATGAACTCATCTCCCCTCTATGTGAGTAATCGAGCAAAGCGTCGGTTGCAACGGGCAATTTGGAATGATACTGCTTTCCTCAATTCGATAAATGTGATGGATTATTCTCTGCTTGTCGGGGTCGATGCTGAGAAGAAGGAACTTGTATGTGGGATAATTGATTACCTTAGACAATACACCTGGGACAAGCAACTAGAGACATGGGTGAAATCGTCCCTCATACCGAAAAATGTACTTCCCACTGTCGTCTCTCCGAAAGAGTACAAGAGGAGATTCAGAAAGTTCATGTCTGCACATTTCTTGAGTGTCCCAGATCATTGGTGCCTGCAGCAGAATCTCCCTGGGCCTTGGGAGCTCTGTGGCACCTCAGATCGTGCTTCTCAGAAAGCGAATGGTGAAGACAATGATCTCTCTTCATAA 4791 41.47 MCHYCGAVTTDSDGKKLENGSSVRLDDAGPACLCKVCKENQGQEMMNSDNRSMSVAPMLSPMPSLSSCNSWVSANCDCSTVANLDIRDGQEGATGSSQEDIDCRQEMMSHNLSEVVHSNDQLSGRDDESVTSISQEATHNGSGVPVSAEIEQSHSNWMDTDLWDPPEPEDPEDHMEGGMGYNDDDDDEFGDTTEWSTSSSFGRTVDEASVSYRFKEEKQRAMQQVMNGKYKVFIRHLLKLVGVAASSGENSENWVDIVSSLSWEAATFLKPVVNGKATNPEDHVKVKCIATGTPNQSQFIKGMVFKKHAAHKHMPTHCKNPKLILIQGMLGEAPISRLSSFNSMDQENDFTNHVIEMIEGCTANVILVEKTAARVIQEAILKKGMTLVLDMKLHRLERIALCTGSPILTSETLMSQKTRQCDAVYFQKIVEEHAGVLEGGKMPTKTLMFIEGCPTRLGCTILLKGAHSDELKRVKFVVQCAVVMAFHLILETSFLVDQRAMFATIPFGGVPAISSDPQAPLEPCSLSVRQAENSSDKSEQPTDSMNVYISNGSHEEASNGSNLESVEKLMSSEPEPYNPAIFSGFSSISDSLKRVMGESFLLSSPYQSLSSYFGHGIDLSGLVAKSDSVSSTPQAAYQFDVEVRGSSEEENSVHEQSVSHQSTLEGLGFHETAPNYSEDTMQKKTSLDSQSILVLMSSRNALKGTMCEQSHFSHIVFYKNFDVPLGKFLQENLLNQKNLCTVCGELPEAHFYYYAHYRKQLSIQVKQLPLDKVLPGETEGKLWMWSRCSKCKSKGGPSKSTKRVLISTAARGLSFGKFLELCFSDDTLPSKSSVCGHSLFGDFLYFFGLGNMVAMFRYSEVAIYTVSMPPQKLEFSSSMRQGHLIRETENVYTKGMVLFTEIAHSLKKIISERKSSNVNHPQGFLNDFSLVEEMLNEERSEFEVNIQNSLSKKGNLDFAFHKYLNLNRLLWDLLLESCIWDRRLQSLMSLGVTTNSGTSENVEPESVMLKMNSNIDVGPEGSESIVENDDTKVQQDMSVDENVLPLKEIAVEGSDGESGGDGLNLPLANEVTEIPIMDDLSPKKLSRQGSLSNGFDRHHSDYEDAQVGSVLSSGDLHVDRTIPISTGDSTLSKLFWTPFSEIRQMNMRDIQRSYFPELKSISSYTPKLLPAAADFIHEEGQKLHILLANDNFIVSDYEGELSSIVACVLALLKDLPCQTDSHNEDSKGEGEGVLQAALSSRSLNKVTSNGSSDSDSSISSEEYRFSSFDRLNLLDSLVPETFKRADHEGVIKSLAKGKYLVNCPYFNQFRDLRSRCCPSELHYIASLSRCINWNAKGGKSKSFFAKTLDDRFIIKEIKRTEYDSFMKFAPEYFKYINESFDMGNQTCLAKVLGIYQVTVREPKSGKEMRHDLMVMENLSFGRNIIRQYDLKGALHARFNPATNNFGEVLLDQNFVNDMNSSPLYVSNRAKRRLQRAIWNDTAFLNSINVMDYSLLVGVDAEKKELVCGIIDYLRQYTWDKQLETWVKSSLIPKNVLPTVVSPKEYKRRFRKFMSAHFLSVPDHWCLQQNLPGPWELCGTSDRASQKANGEDNDLSS 1596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10223044 10234798 - CcPI632755_09g010710.1 Cco09g1071 187528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1071 1596 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1237 1417 IPR027484 -
Cco09g1071 1596 Gene3D - 1419 1558 IPR027483 -
Cco09g1071 1596 SMART PIPK_2 1278 1558 IPR002498 GO:0046488(InterPro)|GO:0052742(InterPro)
Cco09g1071 1596 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 295 465 - -
Cco09g1071 1596 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1336 1502 IPR002498 GO:0046488(InterPro)|GO:0052742(InterPro)
Cco09g1071 1596 MobiDBLite consensus disorder prediction 527 563 - -
Cco09g1071 1596 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 69 1029 - GO:0000285(PANTHER)|GO:0010008(PANTHER)|GO:0046854(PANTHER)
Cco09g1071 1596 SUPERFAMILY GroEL apical domain-like 296 465 IPR027409 -
Cco09g1071 1596 SUPERFAMILY SAICAR synthase-like 1288 1557 - -
Cco09g1071 1596 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1239 1557 IPR002498 GO:0046488(InterPro)|GO:0052742(InterPro)
Cco09g1071 1596 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1419 1558 - -
Cco09g1071 1596 Pfam TCP-1/cpn60 chaperonin family 235 491 IPR002423 GO:0005524(InterPro)
Cco09g1071 1596 Gene3D GroEL 295 465 IPR027409 -
Cco09g1071 1596 CDD PIPKc_PIKfyve 1305 1557 IPR044769 GO:0000285(InterPro)
Cco09g1071 1596 FunFam Putative 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding family 1244 1417 - -
Cco09g1071 1596 MobiDBLite consensus disorder prediction 116 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1071 K00921 - - csv:101202759 2685.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0139 Cco-Chr9:1226814 Cco09g1071 Cco-Chr9:10223044 1.90E-218 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43