Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1074 ATGAGTTGGTTTCAATGTTGCATGTCAGAGGAGAGAGTTAATAGAAATGCTTTGAAAAAGAGCATTAAGGAATACCATGACACAAAAACTTTAGCCTCATTTGCCAATCTTTCCTTCAAGTCTGGTAACAATAGAGAAAGGTACACAAATAAGGAGTTAAAGAGGTTACGAAAAGGGAACATTTTAGCTCAAACTTTTACATTCCGTGAGCTGTGTGTTGCAACGAATAACTTCAACAACGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGCCCTCATTGAAAGCACAAAACAAGTAACGGCCGTGAAGCGACTTGATCCAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTTAATTTGGTTGGGTATTGTGCTGATGCAAATCAAAGGATTTTGGTTTATGACTATATGGCTAATGGTTCCTTGGAGGATCATCTTCTTGATACAACTTCAAATAAGCCACCTCTAGATTGGAACACAAGGATGAAAATCGTCAAAGGAATCGCAAGAGGACTCGAATACTTACACGAAACTGTCAGTCCTCCCGTGATATACCGCGACTTTAAAGCTTCAAACATATTGTTGGATGAAGAATTCAATGCAAAGCTCTCTGATTTTGGTCTTGCAAAGATAGGTCCCATTGGAGATCAATCTCATGTTTCCACAAGAGTGATGGGAACTTATGGTTATTGTGCTCCTGAATATGCACTTACAGGACAATTGTCCACCAAATCCGATGTCTACGGTTTCGGCGTCGTGTTCTTGGAGATAATCACAGGAAGACGAGTTATTGACAACACAAAACCAACGGCACAAAAAAATTTAATTTCTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTCACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCAGTGAAGGCTCTTTATCAAGCTCTAGCAGTGGTAGCCATGTGTTTGCAAGAGGAAGCAAATACTCGGCCATTGATTAGCGACGTGGTTACAGCGCTTCAATATTTAGCTGTGAGTGACAAGAATGTCGATGAAGACGTAGATGACGAATCAGATTCGGAGTCGGTACCTGAATCGGAATTAAGTTGTTCATATTCATGTTCAACTTCTCCTGATAGAAGAAGTGATATTGGAGGTAAAAATGTTGGTGTTGAAGGTGATGGGAGACGAGAGTGGGCACGAATCACCACCCGTGGATTCTCATTCATTCTACCCAACTCCCATGTTCTTCAGATTCAATTCCCTTTCTTAATCGCCATGAAAAGACGGACTTTGCTCAAGGTCATCGTTCTCGGTGATAGTGGGGTTGGTAAGACGTCGTTGATGAACCAATACGTGCATAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGTGCAGATTTTGTCACCAAGGAACTTCAAATTGACGATAGGCTTGTCACACTTCAAATATGGGATACAGCCGGACAAGAAAGATTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTTGACACACTTGATACTTGGCACGATGAGTTTCTTAGACAGGCAAACCCACCTGACCCTAGGACGTTTCCGTTTATTTTGCTTGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAAGGAATGGTGTGCTTCAAAAGAAAATATTCCCTACTTCGAGACATCAGCTAAAGAGGACTACAACGTCGATGCTGCTTTTTTATGCATTGCCAAGACTGCATTAGCCAATGAACATGAGCAGGATATATATTTCCAAGGAATCCCCGAAACCATCGTGGAGACTGAGCAAAGAGGTGGCTGCGCATGCTGA 1926 41.38 MSWFQCCMSEERVNRNALKKSIKEYHDTKTLASFANLSFKSGNNRERYTNKELKRLRKGNILAQTFTFRELCVATNNFNNENLLGEGGFGRVYKALIESTKQVTAVKRLDPNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADANQRILVYDYMANGSLEDHLLDTTSNKPPLDWNTRMKIVKGIARGLEYLHETVSPPVIYRDFKASNILLDEEFNAKLSDFGLAKIGPIGDQSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYGFGVVFLEIITGRRVIDNTKPTAQKNLISWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVVAMCLQEEANTRPLISDVVTALQYLAVSDKNVDEDVDDESDSESVPESELSCSYSCSTSPDRRSDIGGKNVGVEGDGRREWARITTRGFSFILPNSHVLQIQFPFLIAMKRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDTWHDEFLRQANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAKEWCASKENIPYFETSAKEDYNVDAAFLCIAKTALANEHEQDIYFQGIPETIVETEQRGGCAC 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10259692 10269982 - CcPI632755_09g010740.1 Cco09g1074 187531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1074 641 MobiDBLite consensus disorder prediction 376 394 - -
Cco09g1074 641 MobiDBLite consensus disorder prediction 363 401 - -
Cco09g1074 641 CDD Rab7 445 618 - -
Cco09g1074 641 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Cco09g1074 641 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Cco09g1074 641 ProSiteProfiles small GTPase Ras family profile. 439 631 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1074 641 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1074 641 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Cco09g1074 641 ProSiteProfiles small GTPase Rab1 family profile. 440 641 - -
Cco09g1074 641 ProSiteProfiles small GTPase Rho family profile. 437 617 - -
Cco09g1074 641 Gene3D - 438 625 IPR027417 -
Cco09g1074 641 SMART rab_sub_5 445 615 - -
Cco09g1074 641 Pfam Ras family 446 612 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1074 641 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cco09g1074 641 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
Cco09g1074 641 FunFam Ras-related protein Rab7 437 625 - -
Cco09g1074 641 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1074 641 SMART ras_sub_4 442 615 - -
Cco09g1074 641 SMART ran_sub_2 450 641 - -
Cco09g1074 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1074 641 CDD STKc_IRAK 84 353 - -
Cco09g1074 641 NCBIfam small GTP-binding protein domain 445 606 IPR005225 GO:0005525(InterPro)
Cco09g1074 641 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Cco09g1074 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 618 IPR027417 -
Cco09g1074 641 SMART rho_sub_3 447 615 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1074 641 PRINTS Transforming protein P21 ras signature 590 612 - -
Cco09g1074 641 PRINTS Transforming protein P21 ras signature 445 466 - -
Cco09g1074 641 PRINTS Transforming protein P21 ras signature 468 484 - -
Cco09g1074 641 PRINTS Transforming protein P21 ras signature 552 565 - -
Cco09g1074 641 PRINTS Transforming protein P21 ras signature 486 508 - -
Cco09g1074 641 PANTHER OS07G0668900 PROTEIN 36 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0100 Cco-Chr2:1144179 Cco09g1074 Cco-Chr9:10259692 3.00E-88 dispersed
Cco05g1650 Cco-Chr5:22848671 Cco09g1074 Cco-Chr9:10259692 5.10E-07 dispersed
Cco09g0198 Cco-Chr9:1798351 Cco09g1074 Cco-Chr9:10259692 2.10E-89 dispersed
Cco09g1074 Cco-Chr9:10259692 Cco10g2058 Cco-Chr10:33962794 6.20E-124 dispersed
Cco11g0668 Cco-Chr11:7297208 Cco09g1074 Cco-Chr9:10259692 2.80E-28 dispersed
Cco11g1825 Cco-Chr11:30926190 Cco09g1074 Cco-Chr9:10259692 1.30E-30 dispersed
Cco09g1074 Cco-Chr9:10259692 Cco10g0517 Cco-Chr10:6168963 5.90E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87101 PF00069 Pkinase 9.50E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1074 - - - 0.0