Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1085 ATGTTTGTGATTTCTTGTTTTGAGTTTACCATGTTGAGGTTGTTGGTTATTGAGTTTAAGGAGCAGCTAGCTTTGGATAAAGCTCTTCGCTTCTTCGTCGATGCTTCGAAGACGATCGCTTTTGCTTTTTTCCTATCTCTTCTCGCTCTAATTGGTGCGTCGGTGGGGACGGTGATCGGAGCTTTCAAAGGCCATGGTGTGGCCATAGGCGCTATTGCCGGCGCCGCCGTAGTCCTTCAGATATTGAGCTGCACTGCATCTGGGCATAGATATTCTTTATCAAAGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCGAGCAGCTTCTCGGAGTATATGTATCGAGAGATATCGGAGTTGGTCGACGTCGCCGGAGAAAGTTGTGTAGAAGGGATGTCAATGGAGAGAATTCAAATGTTGCCTATTTGTGAATATGATCATAGCAAGATGAACGACTCCATTTCTTGTACCATTTGCTTGGAGGTGAAATTCAATCTTGTTTTCACAACTCCCTTTGTAATTTATGGTACAATTCTTAGAAGGGTTATTCCATCAGACAACAGTTGCCTCTTCAATGCTGTTGGGTATGTTATGGACCATGATAAACACAAGGCTACCGAGCTACGACAGGTCATAGCTGCAACAGTAGCTAGTGATCCAACAAGGTATTCTGAAGCATTTCTTGGAAAGCCGAATGAGGAGTATTGTTCTTGGATTCTTAATTCAGAGAAGTGGGGAGGTGCAATCGAGCTTTCAATACTATCCGAATATTATGGGCGTGAAATAGCAGCATATGATATCCAGACCACACGATGTGACTTGTACGGTCAGGAAAAGAATTATTCAGAAAGGGTTCTGCTAATATATGATGGACTCCACTATGATGCTTTAGTTATGTCTCCATCTGAGGAAGCTCCAGAGGAATTTGATCAGACCATCTTTTCGGTGAATAGAGACAGGACGATTGGGCCAATTGAGGAGCAAGCTCTTCATTTTGTTAAAGAGCAACAAAGGAAAACGAGATTCACCGACACTGCCAACTTCACGCTGCGCTGTGGGGTTTGCCAAATTGGAGTCATTGGCCAAGCGGAGGCTGTGGAACACGCAAAAGCCACTGGACATCTTGTTGAATTGCTGTGGCGTTCTGATTTGTTATATTACCATTTCAAAATCTTGATCACCCAGGAAAGTGTCACATTTACTGATTAG 1227 43.85 MFVISCFEFTMLRLLVIEFKEQLALDKALRFFVDASKTIAFAFFLSLLALIGASVGTVIGAFKGHGVAIGAIAGAAVVLQILSCTASGHRYSLSKEAIMERLMDGKGLMNWASSFSEYMYREISELVDVAGESCVEGMSMERIQMLPICEYDHSKMNDSISCTICLEVKFNLVFTTPFVIYGTILRRVIPSDNSCLFNAVGYVMDHDKHKATELRQVIAATVASDPTRYSEAFLGKPNEEYCSWILNSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKNYSERVLLIYDGLHYDALVMSPSEEAPEEFDQTIFSVNRDRTIGPIEEQALHFVKEQQRKTRFTDTANFTLRCGVCQIGVIGQAEAVEHAKATGHLVELLWRSDLLYYHFKILITQESVTFTD 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10338694 10347639 - CcPI632755_09g010850.1 Cco09g1085 187542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1085 408 Gene3D - 178 352 - -
Cco09g1085 408 Pfam OTU-like cysteine protease 190 286 IPR003323 -
Cco09g1085 408 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 182 381 - GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)
Cco09g1085 408 FunFam ubiquitin thioesterase OTU1 180 352 - -
Cco09g1085 408 CDD OTU_plant_OTU1_2-like 182 345 - -
Cco09g1085 408 SUPERFAMILY Cysteine proteinases 186 304 IPR038765 -
Cco09g1085 408 ProSiteProfiles OTU domain profile. 184 306 IPR003323 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1085 K13719 - csv:101222942 389.037