Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1086 | ATGGTGAAAAGCTTACAAGGCGGAGGGCAAAACCTCCCGGCGGACGTGACGCAGGTGATTGATCAATTGGAGCGCCACTGCTTGGCTCCCGATGGATCTCTCGTCTCCAAGCCGGCCCACTACGATCTGCAGCTCGCGAGAGAAGAAATGTCGAGGGAAAGATTGCGTTATTTGGAAGCCATGGCAATCTATTGTGAAGCAATTGCAATGGTGGAAGAGTACCAACAGGCTGTTTCAATGGCGAACCTTGGAGGAGTTCGAGACGTTCACGCTCTTTATCCACAACTAGGCTTGAAGAACTCGCCTCAGGTTTATGAGACCCTCGAGCACCGAATGGTTGTGGCAGAAGCATCTCAAAGATTGAGGCTTCCTCTTATATCAAAGGACGGTGAAATCCAGGAGGAAGAGATTGAGAAGTTGAGTTTAGTATCTCGAAGTTCCCTTGATAGTACAAGCACGGGTGTAACAATCAGCTCAAGTGCTAATTCAACAAATTATACAAGTGCTAGCAGTACCGGAAGCATTGTGAACAATAGTCTTTCAGTAAGCTCAACGGAAACTGCAGAACCTGGAGTTGGTGGTGTTCCCAATCGCTTTCTTGGAATCACACCTGCCTTTTTATGGCAAACACAGCTCCATCAAACGCCTTCCATGGATATGGCCGAATATCAAATGGCTCTTTCCCGCGAGATTGATGCTCGTTTGAAAACTAAATGTGATAAAGTAGCTGATGCTTTTGTGATGGATGATATTGAGTCATCATCTGGGCATCATAGCTCTAGTGCTCGGCTTCCAGAGAGAGTCAAGTTGATCATTGAGGAAATTGAAAGGGAAGAAGCAGCTTTACGGCAAGAGCTTTACTCGGTAGACAGAAAGTTTGCTGAATATTACAATGTTCTTGAGCAGATATTGGGAGTACTAATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATGACGATCTCCAGAAAACATGGCTGTGTAAAAGGTGTGAGACCATGAATGCGAAACTGAGCGTTTTAGAGCACGTTCTCCTGCTTGAAACTTACACTCAGGAATCTATACCAGCCCTTCATAAAATAAGAAAATATCTTGTTGAAGCTACGGAGGAAGCTTCTATTTCTTATAACAAAGCAGTTACTCGTCTCCGGGAGTATCAAGGCGTAGACCCTCATTTCGACACAATTGCGAGGCAGTACCATGATATTGTGATGAAACTTGAGAATATGCAATGGACAATTCACCAAGTTGAGATGGACTTGAAACGCTTGCCAGATCAGTCAAAAGATTCCAGCTCAATCCAACGGACTGTTGCCGCCTTCCTCAAAAATCTCTATAAATATTTCCGTTCCATCTCACAATCATTTCATCCTTCCTTCTTTCCTCTCTTTTCACGCGTTCTTCGTTCTTTCACCTTCTGTGTTTTTGGTACCTTAAGAGCTGAGGATTGTGAAGGGCCAGGTTTAGCTTATAATTGTTTCTATGTTCCAGATTTTCAGCCGTCCGGTTTCGTTGGAGCTTTCATCCAAACAAGGTTCATGGTTGAATTAGACTACCAGATCCCATCCGCATTTGATCCATTCGCCGAAGCCAAGGATTCGGATGCCCCCGGAACCAAAGAGTATGTTCATATTCGCGTCCAGCAAAGGAATGGGAAGAAGTGCTTGACTACAGTCCAAGGTCTGAAGAAAGAGTTTAGCTACGAGAAGATTCTCAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTGCAAGACAAAGAATTGGGGAAGATAATTCAACTTCAAGGCGATCAGCGTAAGAACGTCTCTCAGTTTCTTGTTCATGCTGGTCTGGTCAAGAAGGATCAGATCAAGATTCATGGGTTTTGA | 1887 | 44.14 | MVKSLQGGGQNLPADVTQVIDQLERHCLAPDGSLVSKPAHYDLQLAREEMSRERLRYLEAMAIYCEAIAMVEEYQQAVSMANLGGVRDVHALYPQLGLKNSPQVYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSLVSRSSLDSTSTGVTISSSANSTNYTSASSTGSIVNNSLSVSSTETAEPGVGGVPNRFLGITPAFLWQTQLHQTPSMDMAEYQMALSREIDARLKTKCDKVADAFVMDDIESSSGHHSSSARLPERVKLIIEEIEREEAALRQELYSVDRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDDLQKTWLCKRCETMNAKLSVLEHVLLLETYTQESIPALHKIRKYLVEATEEASISYNKAVTRLREYQGVDPHFDTIARQYHDIVMKLENMQWTIHQVEMDLKRLPDQSKDSSSIQRTVAAFLKNLYKYFRSISQSFHPSFFPLFSRVLRSFTFCVFGTLRAEDCEGPGLAYNCFYVPDFQPSGFVGAFIQTRFMVELDYQIPSAFDPFAEAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10359758 | 10368477 | - | CcPI632755_09g010860.1 | Cco09g1086 | 187543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1086 | 628 | SUPERFAMILY | eIF1-like | 516 | 628 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco09g1086 | 628 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 546 | 616 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco09g1086 | 628 | CDD | eIF1_SUI1 | 544 | 627 | IPR005874 | GO:0003743(InterPro) | |
Cco09g1086 | 628 | PANTHER | AUGMIN SUBUNIT 4 FAMILY MEMBER | 5 | 425 | IPR029327 | GO:0051011(PANTHER)|GO:0051225(InterPro)|GO:0051225(PANTHER)|GO:0070652(InterPro)|GO:0070652(PANTHER) | |
Cco09g1086 | 628 | NCBIfam | translation initiation factor SUI1 | 523 | 628 | IPR005874 | GO:0003743(InterPro) | |
Cco09g1086 | 628 | Gene3D | - | 512 | 628 | - | - | |
Cco09g1086 | 628 | Coils | Coil | 272 | 292 | - | - | |
Cco09g1086 | 628 | Pfam | HAUS augmin-like complex subunit 4 | 188 | 422 | IPR029327 | GO:0051225(InterPro)|GO:0070652(InterPro) | |
Cco09g1086 | 628 | MobiDBLite | consensus disorder prediction | 151 | 171 | - | - | |
Cco09g1086 | 628 | FunFam | Eukaryotic translation initiation factor SUI1 | 518 | 628 | - | - | |
Cco09g1086 | 628 | Pfam | Translation initiation factor SUI1 | 543 | 616 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g1086 | Cco-Chr9:10359758 | Cco10g0500 | Cco-Chr10:6002603 | 2.90E-57 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1086 | K16587 | - | csv:101203307 | 783.482 |