Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1086 ATGGTGAAAAGCTTACAAGGCGGAGGGCAAAACCTCCCGGCGGACGTGACGCAGGTGATTGATCAATTGGAGCGCCACTGCTTGGCTCCCGATGGATCTCTCGTCTCCAAGCCGGCCCACTACGATCTGCAGCTCGCGAGAGAAGAAATGTCGAGGGAAAGATTGCGTTATTTGGAAGCCATGGCAATCTATTGTGAAGCAATTGCAATGGTGGAAGAGTACCAACAGGCTGTTTCAATGGCGAACCTTGGAGGAGTTCGAGACGTTCACGCTCTTTATCCACAACTAGGCTTGAAGAACTCGCCTCAGGTTTATGAGACCCTCGAGCACCGAATGGTTGTGGCAGAAGCATCTCAAAGATTGAGGCTTCCTCTTATATCAAAGGACGGTGAAATCCAGGAGGAAGAGATTGAGAAGTTGAGTTTAGTATCTCGAAGTTCCCTTGATAGTACAAGCACGGGTGTAACAATCAGCTCAAGTGCTAATTCAACAAATTATACAAGTGCTAGCAGTACCGGAAGCATTGTGAACAATAGTCTTTCAGTAAGCTCAACGGAAACTGCAGAACCTGGAGTTGGTGGTGTTCCCAATCGCTTTCTTGGAATCACACCTGCCTTTTTATGGCAAACACAGCTCCATCAAACGCCTTCCATGGATATGGCCGAATATCAAATGGCTCTTTCCCGCGAGATTGATGCTCGTTTGAAAACTAAATGTGATAAAGTAGCTGATGCTTTTGTGATGGATGATATTGAGTCATCATCTGGGCATCATAGCTCTAGTGCTCGGCTTCCAGAGAGAGTCAAGTTGATCATTGAGGAAATTGAAAGGGAAGAAGCAGCTTTACGGCAAGAGCTTTACTCGGTAGACAGAAAGTTTGCTGAATATTACAATGTTCTTGAGCAGATATTGGGAGTACTAATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATGACGATCTCCAGAAAACATGGCTGTGTAAAAGGTGTGAGACCATGAATGCGAAACTGAGCGTTTTAGAGCACGTTCTCCTGCTTGAAACTTACACTCAGGAATCTATACCAGCCCTTCATAAAATAAGAAAATATCTTGTTGAAGCTACGGAGGAAGCTTCTATTTCTTATAACAAAGCAGTTACTCGTCTCCGGGAGTATCAAGGCGTAGACCCTCATTTCGACACAATTGCGAGGCAGTACCATGATATTGTGATGAAACTTGAGAATATGCAATGGACAATTCACCAAGTTGAGATGGACTTGAAACGCTTGCCAGATCAGTCAAAAGATTCCAGCTCAATCCAACGGACTGTTGCCGCCTTCCTCAAAAATCTCTATAAATATTTCCGTTCCATCTCACAATCATTTCATCCTTCCTTCTTTCCTCTCTTTTCACGCGTTCTTCGTTCTTTCACCTTCTGTGTTTTTGGTACCTTAAGAGCTGAGGATTGTGAAGGGCCAGGTTTAGCTTATAATTGTTTCTATGTTCCAGATTTTCAGCCGTCCGGTTTCGTTGGAGCTTTCATCCAAACAAGGTTCATGGTTGAATTAGACTACCAGATCCCATCCGCATTTGATCCATTCGCCGAAGCCAAGGATTCGGATGCCCCCGGAACCAAAGAGTATGTTCATATTCGCGTCCAGCAAAGGAATGGGAAGAAGTGCTTGACTACAGTCCAAGGTCTGAAGAAAGAGTTTAGCTACGAGAAGATTCTCAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTGCAAGACAAAGAATTGGGGAAGATAATTCAACTTCAAGGCGATCAGCGTAAGAACGTCTCTCAGTTTCTTGTTCATGCTGGTCTGGTCAAGAAGGATCAGATCAAGATTCATGGGTTTTGA 1887 44.14 MVKSLQGGGQNLPADVTQVIDQLERHCLAPDGSLVSKPAHYDLQLAREEMSRERLRYLEAMAIYCEAIAMVEEYQQAVSMANLGGVRDVHALYPQLGLKNSPQVYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSLVSRSSLDSTSTGVTISSSANSTNYTSASSTGSIVNNSLSVSSTETAEPGVGGVPNRFLGITPAFLWQTQLHQTPSMDMAEYQMALSREIDARLKTKCDKVADAFVMDDIESSSGHHSSSARLPERVKLIIEEIEREEAALRQELYSVDRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDDLQKTWLCKRCETMNAKLSVLEHVLLLETYTQESIPALHKIRKYLVEATEEASISYNKAVTRLREYQGVDPHFDTIARQYHDIVMKLENMQWTIHQVEMDLKRLPDQSKDSSSIQRTVAAFLKNLYKYFRSISQSFHPSFFPLFSRVLRSFTFCVFGTLRAEDCEGPGLAYNCFYVPDFQPSGFVGAFIQTRFMVELDYQIPSAFDPFAEAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10359758 10368477 - CcPI632755_09g010860.1 Cco09g1086 187543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1086 628 SUPERFAMILY eIF1-like 516 628 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco09g1086 628 ProSiteProfiles Translation initiation factor SUI1 family profile. 546 616 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco09g1086 628 CDD eIF1_SUI1 544 627 IPR005874 GO:0003743(InterPro)
Cco09g1086 628 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 5 425 IPR029327 GO:0051011(PANTHER)|GO:0051225(InterPro)|GO:0051225(PANTHER)|GO:0070652(InterPro)|GO:0070652(PANTHER)
Cco09g1086 628 NCBIfam translation initiation factor SUI1 523 628 IPR005874 GO:0003743(InterPro)
Cco09g1086 628 Gene3D - 512 628 - -
Cco09g1086 628 Coils Coil 272 292 - -
Cco09g1086 628 Pfam HAUS augmin-like complex subunit 4 188 422 IPR029327 GO:0051225(InterPro)|GO:0070652(InterPro)
Cco09g1086 628 MobiDBLite consensus disorder prediction 151 171 - -
Cco09g1086 628 FunFam Eukaryotic translation initiation factor SUI1 518 628 - -
Cco09g1086 628 Pfam Translation initiation factor SUI1 543 616 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1086 Cco-Chr9:10359758 Cco10g0500 Cco-Chr10:6002603 2.90E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1086 K16587 - csv:101203307 783.482