Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1092 ATGGAGAACCTGAAGAAGTCAGTGATCAAAATCGCCTATACCAGAGACCACGCTAACCTCCCTTCTCTGCAACGCTCTTTCATCCCCTTCCTCTACATGGCGTCTTCTCTCTACAAGCTCGGTCTGTCCCTTCGACACCATTTCTACCTCTACGGCATATTTCGCAAGCATCGGTTGCCAGTGCCAGTTATTAGTGTTGGGAATTTGACTTGGGGAGGCAATGGGAAAACACCAATGGTCGAGTTCATTGCCTTATGGCTTGCGGGCTCTGGGATTTCACCTCTAATTCTTAATAGGGGCTATGCTGGTGGAGACGAAGCAAGAATGCTTAGGAGGCATCTTTCTGGGAGTTCCATTAAAGTAGGTATTGGAGCAGATAGGAGAGCTACTGCTGCTTGGTATTTTAACAAATATGGTTATGTTGAATCTCAAAGTAGCACGTTGACTGAGAAGCATTGCTTAGAACAAGTGGGAAATCTTCCTAAGTCTGAAAAAATTGGTGCTGTTATCCTTGATGATGGAATGCAGCACTGGAGTTTGCACCATGACTTGGAGGTTGTTATGTTCAATGGGATATCATTGTTGGGAAATGGGCAATTATTACCACTTGGACCTTTAAGAGAACCATTAGCTGCACTCAAGAGGGCAGACGTTGCCATTATTCATCATGCTAATCTGGTTTCAGCACAAAATATTGAAGATTTTGTGATAATGTTGCGGAAAATTAAGGATTCACTTACCGTGGTGTTTACTGAAATGTGTCCCTCATTCTTCTTTGAAGTGACAAATATAAACTCCATAATATCCTTGGGAACATTTTCTAAGAGTGTAGTATTATGCGTCTCTGCCATTGGCTCTGCTGATGCTTTTGTGCAGACAATGCAAAAGATAGGAGCATATCATGTTGATCGACTCGACTTCAGTGACCATCACGTCTTTCAAGACAGGGATATTGCACTGATCAAAATAAAGCTTGAGGAATTGGAGAAGAAATTTGCTTCCAAGCCAGTCATTGTTGTTACGGAAAAGGATTATGATCGGGATCCTTTGACATTGAAGGGCTTGCATCCATACCGTGTTTTCGCTCTCCGTTCTCAACTGCAAATCATGCACACCAAAGGTTGCAGTGAGAATAGCTTCAAGACGCTGTTGGAGTCGGCGGTACGAGTAAAACTCTCTTCTGTAATGAGCAGCCGTTCAGCGTTCACCCTTCGCGTTTTCTTTCAAACTTCCCATCGTTCAATCACTCCCCTACACGCCTCAGTCGCTCTCGTTTCCGCCGGTGCCGGCATCCCTCTTCGAGTCTCCGCCTCTGCGTGGGTGTTCATTGATACATCCGAAATCAAGCGTGTTACATTCGTTGCTTTGGGGATGCCCTCAATATCAACCACATCTTCTCTGTTTCGATTACCGGTAAAATCATGTAAAACCCTGCTGTGGTTCTTTTTGTTATTCGCCTTCTTTCTCATTAGTCATTCCTGCACAGGGATAGAAACAATGAAGTTGAAGCTCGACAGCAAGAGCAAGAGCTTGCTGCAGGCAAGCAAGCTAAAGAAAAAGCATGGTGAAAAGAAAAGTCACGTCAATGAAAGCAGCAAGAGCCAAGCGGAAAACCAGAACAGTACCGAACTACATTTAGAACAAGAAGCTTTAACCTTAGATGAGGCTCCATTACAACAACTTTTGGATTCTCCTCCACCCTTGGATTATAGCGAGGATCATGCCAGTGCGGGCGACAACCATGGTAATTTAGAGAATGATCAGGACCAAGAAAACGAGAATGATAACCCCGTACCTAATCAAGTAGATGAGGCAAGCGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACTATTGGAGATGTTCCCTTGGAATGGTATAGAGACGAGAAGCATATTGGATATGACATATCGGGAAAGAAAATATTGAAGAAAGAAAGAGAAGACAAATTACAATCATTTTTAGCAAGTGCTGATGACTCAAAAAGTTGGCGCAAGGTATATGACGAATATAATGATGAGGTAATAGAGTTATCGAAGGAAGAAGTCAGGCAACTGCGGAGACTGCTCAAAGGAAAGGCTCCACATGCAGACTTTGATCCATATCCGTCTTATGTTGATTGGTTTAAGTGGGATGACGCTAAGCACCCACTGTCAAATGCACCTGAACCAAAGAGGCGTTTTGTTCGGTCAAAATTGGAAGCCAAGAAGGTGGTTCAATTAGTTCGGGCAATTCGAAATGGACATATTAATTTTGACAAGCCGAAAGAAGAACAACGTTTCTACCATTTGTGGGGTGATGATTCTAGCTCCACAGAGAAGACCACACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCAGGTCATGATGAATCATATAATCCTTCATTGGAATATATCCCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTACGAAGAAGATCGACCAAAGTTTATTCCTAGGAGGTTTACATCCATGAGAAGTGTACCTGCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATCTGTACTTGTGCCCTCGTGTCCGGAAGAAACGTATTAATATTGATCCTGAATCCTTGAAGCCTAAGCTGCCAAACCGGAAAGATCTTAGACCTTATCCGATTACATGCTATCTTGAATACAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAACGGCCAATGGATTGCTTCAGGTTCATTGGATGGAACTGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGTATGTAGCTTGGAATCCTTTGCCTGAGCTTCCGATATTGGCTGCTGCTGTGGGTGTTGATGTATTGCTTTTAAACACTGGTTTTGGGGACGGGGAGGTTCAAGCAAAAATTAAGGAACTTCTCCAAGTTGACACACTTCCTGGAACTGAAAATTCTGATAAAACGCCAGTTGCAACCTGGCTTCAAGATGACAAGATCGAGGGGATTAGATTGAGGCATTTTAAGACTGTAACTGCAGTTGAGTGGCATCGTAAAGGAGATTATCTTTCAACAGTTATGCCAGCTGATATCCTATTTAATTTTCTCTCTAGAAAGCTAACACAAAAAATTCCGTTCAAGTTGCACGGGCTTCCTGTTTCATCAGTTTTTCATCCCACTCAATCCATCCTCTTTGTATCGACAAAGAAGGAGGTCCGTGTTTATAATCTATTGAAGCAAAAACTCATGAAGAAACTGAAAACTGGACTCCGGGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTTGATATGGACCTTTCATCACAGCCTTACAAAATTCTCAGCTGTCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCACGCCCGTTGTTCGCATCCTGCTCAGATGATTGCACTGCATATGTTTTCCATGGGATGGTTTACTTGGATCTGACACAGAATCCCCTTATTACACCGTTGGAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGATTGCAAATTTCACCCGATGCAGCCTTGGTTATTTACTGCTGGTGCAGATTCAAAGAGGGAAGCATGGTGGTTAGGTGCAGCCAGACTAATTATTGCTGGAGCAGCAGCTTGGTTCTGTGGAACTCGTTGA 3720 42.88 MENLKKSVIKIAYTRDHANLPSLQRSFIPFLYMASSLYKLGLSLRHHFYLYGIFRKHRLPVPVISVGNLTWGGNGKTPMVEFIALWLAGSGISPLILNRGYAGGDEARMLRRHLSGSSIKVGIGADRRATAAWYFNKYGYVESQSSTLTEKHCLEQVGNLPKSEKIGAVILDDGMQHWSLHHDLEVVMFNGISLLGNGQLLPLGPLREPLAALKRADVAIIHHANLVSAQNIEDFVIMLRKIKDSLTVVFTEMCPSFFFEVTNINSIISLGTFSKSVVLCVSAIGSADAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKIKLEELEKKFASKPVIVVTEKDYDRDPLTLKGLHPYRVFALRSQLQIMHTKGCSENSFKTLLESAVRVKLSSVMSSRSAFTLRVFFQTSHRSITPLHASVALVSAGAGIPLRVSASAWVFIDTSEIKRVTFVALGMPSISTTSSLFRLPVKSCKTLLWFFLLFAFFLISHSCTGIETMKLKLDSKSKSLLQASKLKKKHGEKKSHVNESSKSQAENQNSTELHLEQEALTLDEAPLQQLLDSPPPLDYSEDHASAGDNHGNLENDQDQENENDNPVPNQVDEASDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDISGKKILKKEREDKLQSFLASADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGKAPHADFDPYPSYVDWFKWDDAKHPLSNAPEPKRRFVRSKLEAKKVVQLVRAIRNGHINFDKPKEEQRFYHLWGDDSSSTEKTTHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLRPYPITCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKIKELLQVDTLPGTENSDKTPVATWLQDDKIEGIRLRHFKTVTAVEWHRKGDYLSTVMPADILFNFLSRKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLMKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDCTAYVFHGMVYLDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSKREAWWLGAARLIIAGAAAWFCGTR 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10421931 10436930 + CcPI632755_09g010920.1 Cco09g1092 187549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1092 1239 NCBIfam tetraacyldisaccharide 4'-kinase 54 345 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cco09g1092 1239 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 889 926 - -
Cco09g1092 1239 MobiDBLite consensus disorder prediction 574 588 - -
Cco09g1092 1239 SMART BOP1NT_2 627 882 IPR012953 GO:0006364(InterPro)
Cco09g1092 1239 Gene3D - 872 1220 IPR015943 GO:0005515(InterPro)
Cco09g1092 1239 SUPERFAMILY WD40 repeat-like 846 1215 IPR036322 GO:0005515(InterPro)
Cco09g1092 1239 Hamap Tetraacyldisaccharide 4'-kinase [lpxK]. 19 389 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cco09g1092 1239 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 500 1220 IPR028598 GO:0042254(InterPro)
Cco09g1092 1239 MobiDBLite consensus disorder prediction 560 618 - -
Cco09g1092 1239 FunFam Ribosome biogenesis protein BOP1 homolog 872 1220 - -
Cco09g1092 1239 Pfam BOP1NT (NUC169) domain 627 882 IPR012953 GO:0006364(InterPro)
Cco09g1092 1239 Pfam Tetraacyldisaccharide-1-P 4'-kinase 30 373 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cco09g1092 1239 SMART WD40_4 1126 1165 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 SMART WD40_4 1177 1220 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 SMART WD40_4 882 921 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 SMART WD40_4 1083 1122 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 SMART WD40_4 1043 1080 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 Pfam WD domain, G-beta repeat 1180 1214 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 Pfam WD domain, G-beta repeat 884 920 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 Pfam WD domain, G-beta repeat 1128 1164 IPR001680 GO:0005515(InterPro)
Cco09g1092 1239 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 520 1215 IPR028598 GO:0000463(PANTHER)|GO:0030687(PANTHER)|GO:0042254(InterPro)|GO:0043021(PANTHER)|GO:0070545(PANTHER)
Cco09g1092 1239 MobiDBLite consensus disorder prediction 516 542 - -
Cco09g1092 1239 ProSitePatterns Trp-Asp (WD) repeats signature. 908 922 IPR019775 -
Cco09g1092 1239 ProSiteProfiles Trp-Asp (WD) repeats profile. 889 930 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1092 K14824 - - csv:101220511 1250.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0214 Cco-Chr8:3547135 Cco09g1092 Cco-Chr9:10421931 0.00E+00 dispersed
Cco09g1092 Cco-Chr9:10421931 Cco10g1702 Cco-Chr10:30559241 3.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003594 1 10 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 2 1 1 2 1 1 2 0 1 1 0 43