Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1096 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCACCAACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGGAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCTGATCTAGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAAGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTCGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGAGTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCAGAGATTGAATGCTCGAGGATGAAAATGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGGGGATTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTGTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAGTAGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAATGCATATGACTCCATTTCAAGTGACAAATTAGTCTCAGACTATTCCCACTCAATCGCTTTCAACCCTTCTAACATTGCACCTGCTTCCAGCATGTTGTCTCCCAACTCATTCCTCTTAGCTTTGTAG 1365 47.03 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSTNLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGELPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKMMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMGDCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDFFASVEEEEILNLEFEENSVLLCLVDNDFSVVKSRNGGLEMEFESDFMLETVRSEVENAYDSISSDKLVSDYSHSIAFNPSNIAPASSMLSPNSFLLAL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10472057 10474232 - CcPI632755_09g010960.1 Cco09g1096 187553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1096 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1096 454 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cco09g1096 454 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 259 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco09g1096 454 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1096 454 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1096 454 Gene3D Transferase(Phosphotransferase) domain 1 2 310 - -
Cco09g1096 454 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Cco09g1096 454 CDD STKc_MAPKKK 2 258 - -
Cco09g1096 454 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0982 Cco-Chr2:12165047 Cco09g1096 Cco-Chr9:10472057 5.00E-84 dispersed
Cco04g1445 Cco-Chr4:29883571 Cco09g1096 Cco-Chr9:10472057 8.30E-62 dispersed
Cco04g1964 Cco-Chr4:33934069 Cco09g1096 Cco-Chr9:10472057 4.80E-83 dispersed
Cco09g1096 Cco-Chr9:10472057 Cco10g0444 Cco-Chr10:5243342 7.70E-12 dispersed
Cco09g1096 Cco-Chr9:10472057 Cco02g0207 Cco-Chr2:2013284 6.20E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87102 PF00069 Pkinase 7.10E-52 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1096 K20716 - csv:101205426 679.863