Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1100 ATGGCGAATCTCCCTCAATCGCTCTCCATGAATGCTGCGTTTGGAGGTCCCGGTCCGTCAATCCCCGGTGCCTCCGGAGCTCCACCGAACAAGGAGCGAAAAATGGCTTCTTCGGAGCAGTTGGTGCTCGACCTCAGCAATCCGGATCTCCGGGAGAACGCTCTCCTTGAACTGTCGAAGAAGAGGGAACTGTTTCAAGATTTGGCCCCATTGTTGTGGAACTCCTTTGGAACCATTGCTGCCTTATTGCAAGAGATTGTATCGATATATCCCGTTCTTTCACCCCCAAATCTAACCCCTGCACAGTCAAATAGAGTTTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCTTCTCATTCAGATACAAGGATGTTGTTTCTCAATGCTCACATACCGTTGTATTTGTATCCTTTTCTTAACACAACTAGCAAGTCGAGGCCTTTTGAGTACTTGCGCCTTACTAGCTTAGGTGTCATTGGTGCGTTGGTGAAGGTAGATGATACAGAAGTAATAAGTTTTCTTCTGTCAACTGAAATAATTCCCCTATGCCTGCGAACCATGGAAATGGGAAGTGAGTTGTCAAAAACAGTTGCAACATTTATTGTGCAGAAAATTTTGCTGGATGATGTGGGGTTAGATTATATTTGTACTACAGCTGAGCGATTTTTTGCTGTCGGCCGGGTTCTGGGGAATATGGTAGCAGCTCTTGCTGAGCAGCCCTCCTCTCGGCTTTTGAAACACATAATTCGATGTTATCTTCGATTGTCAGATAATCCAAAGGCTTGTGACGCCTTGAGGAGCTGTCTTCCAGACATGTTGAGGGATGCTACTTTCAATAGCTGCCTTCGGGAGGATCCAACCACTAGGAGGTGGCTGCAGCAGTTGCTACACAATGTAGGAATGAGTAGGGTTCCAGCACTTCAGGCAGGAGCTGGATTTGATCACATGATGGAGTTTTCTTTTATGATAGTTCTTAGCCGTGAAACCTCATTTGTACCAATTAAAGAGCGCGGTTTTCCCGTATTCGCCTCAACAATAGTTCCCTCCCAAGTCCCAACAATCCCTTCTCGAAATTGTTGGGATCCGTCTCTTCTTACAATGCCAACCAAAGGAAATGGAGAAAGGAATGGTAGAGACATGATTGGAATGTTGGAGACGAGATTGTGCCCCCACCTTGAGATGCTTGCATCTGTTTTTGGTGAAGTTTTCATTTCTCCTTCTGAATCTCGTGGACGGAAACTGGATCCTTCTCAGCAACTCTCCTCTGCAATTGAATCATTGGCTCCTTCCATATGTGCTGCTTTCTGCTTTCGTCCAATTTGTTGCAAAATGTTTTTTATTGAATCTTGGAATATGAATTTGAACAATGTTAAGGTTCCCAAAATGCCTGGTGGTGGTTCTGCTTCTTCTTTGGTGAAGGTTGGGATTATTGGTGGGCTTGGGTTATATGCAGCTGCCAATAGTCTCTACAATGTTGAGGGAGGGCATCGGGCCATCGTGTTTAACCGTCTAGTTGGAATTAAAGATGAGGTTTATCCTGAAGGAACACATTTTATAATCCCTTGGTTCGAGAGGCCAATCATATATGATGTCCGTGCGCGACCCAATCTAGTGGAGAGTAGTTCTGGAAGCCGAGACCTCCAGATGGTTAAAATTGGTCTTCGAGTTCTCACCCGCCCGCTACCAAGTGAGTTACCTACATTGTATAGAACACTAGGTGAAAACTATAATGAAAGGGTTCTGCCTTCCATTATTCACGAAACTCTGAAATCTGTAGTCGCTCAGTACAATGCCAGCCAACTTCTTACGCAAAGAGAGGCTGTAAGTAGAGAAATCCGAAAGACTTTGACTGAGAGAGCAGCCCAGTTCAATATTGCTCTTGATGATGTTTCCATAACAAGTTTAACTTTTGGAAAGGAGTTTACAGCTGCAATCGAAGCCAAGCAAGTGGCTGCCCAAGAAGCCGAAAGAGCTAAATTCGTTGTCGAGAAGGCCGAACAGGACAAGAGAAGTGCTATAATTAGAGCACAGGGAGAAGCCAAGAGTGGGCAGCTGATAGGACAAGCTGTTGCCAACAACCCTGCGTTTATGACTCTGAGGAAGATTGAAGCAGCAAGAGAAATTGCACATACTATTGCAAACTCATCCAACAAAGTTTTCCTCAATTCAGATGATCTGTTGTTGAACCTTCAAGAGATGAATTTGGAGCCCAGTGGAAAGAAGTAA 2226 44.83 MANLPQSLSMNAAFGGPGPSIPGASGAPPNKERKMASSEQLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHSDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPKACDALRSCLPDMLRDATFNSCLREDPTTRRWLQQLLHNVGMSRVPALQAGAGFDHMMEFSFMIVLSRETSFVPIKERGFPVFASTIVPSQVPTIPSRNCWDPSLLTMPTKGNGERNGRDMIGMLETRLCPHLEMLASVFGEVFISPSESRGRKLDPSQQLSSAIESLAPSICAAFCFRPICCKMFFIESWNMNLNNVKVPKMPGGGSASSLVKVGIIGGLGLYAAANSLYNVEGGHRAIVFNRLVGIKDEVYPEGTHFIIPWFERPIIYDVRARPNLVESSSGSRDLQMVKIGLRVLTRPLPSELPTLYRTLGENYNERVLPSIIHETLKSVVAQYNASQLLTQREAVSREIRKTLTERAAQFNIALDDVSITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSGQLIGQAVANNPAFMTLRKIEAAREIAHTIANSSNKVFLNSDDLLLNLQEMNLEPSGKK 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10542070 10555496 + CcPI632755_09g011000.1 Cco09g1100 187557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1100 741 Coils Coil 648 668 - -
Cco09g1100 741 SUPERFAMILY Band 7/SPFH domain 520 656 IPR036013 -
Cco09g1100 741 SUPERFAMILY ARM repeat 43 298 IPR016024 -
Cco09g1100 741 Pfam Cell differentiation family, Rcd1-like 41 299 IPR007216 GO:0006402(InterPro)|GO:0030014(InterPro)
Cco09g1100 741 Pfam SPFH domain / Band 7 family 492 668 IPR001107 -
Cco09g1100 741 MobiDBLite consensus disorder prediction 13 39 - -
Cco09g1100 741 Gene3D - 30 300 IPR011989 -
Cco09g1100 741 SMART PHB_4 488 649 IPR001107 -
Cco09g1100 741 FunFam Prohibitin 2 517 651 - -
Cco09g1100 741 PRINTS Prohibitin signature 532 548 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 550 569 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 619 638 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 667 683 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 596 612 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 573 591 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PRINTS Prohibitin signature 644 667 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 PANTHER UNCHARACTERIZED 30 302 IPR007216 GO:0000932(PANTHER)|GO:0006402(InterPro)|GO:0017148(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER)
Cco09g1100 741 Gene3D Band 7 domain 519 651 IPR036013 -
Cco09g1100 741 CDD SPFH_prohibitin 489 682 IPR000163 GO:0016020(InterPro)
Cco09g1100 741 FunFam Cell differentiation protein RCD1 31 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1100 K12606 - - csv:101204529 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0212 Cco-Chr2:2053740 Cco09g1100 Cco-Chr9:10542070 1.80E-84 dispersed
Cco06g1904 Cco-Chr6:29242493 Cco09g1100 Cco-Chr9:10542070 5.10E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g550 . . . . Bpe09g00162 . Bma10g00565 Bma13g01070 . . . Cma09g00964 Car01g00990 Car09g00879 . Cpe06g00779 Cpe02g00784 Bhi09g01681 . . . Hepe01g1257 . . . . . . . . . . . . Cone15ag1177 Lsi02g01890 Csa07g01111 . . Blo07g00893 Blo10g00843 Bda05g00710 . . . . . . Cmo01g01165 Cmo09g00966 . . . . . . . . . . . . . Cla09g01025 Cam09g1080 Cec09g1079 Cco09g1100 . . Cre09g1045 . . . Cme01g01013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004472 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59954 PF04078 Rcd1 7.60E-129 No_clan Cco TR