Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1106 ATGATCTTGATTTTGTTAGTAGAGAAGAAAAGAGTGGAGGGAAATAAGGTTGTTGTTCCAAGCATCATAGTATTTGGAGATTCTTCAGTAGATTCAGGCAACAACAACCATATTTCAACTATTTTAAGAAGTGATTTTGCTCCTTATGGTCGTGATTTTGAAGGTGGAAAAGCCACAGGAAGGTTCTCCAATGGCAAAATTGTTACTGATTTTATCTCTGAAGCCTTTGGGATCAAACCCACAATCCCAGCTTACTTAGATCCTTCTTATAATATCACTCATTTTGCTTCTGGTGTTTGCTTTGCTTCTGCTGGAACTGGCTATGATAATGCCACTTCTGATGTTTTCTCAGTGATTCCTCTATGGAAAGAACTCCAATATTACAAAGAATACCAAAAGAAACTGAGAGACTATCTTGGCCCATCAAAGGCCAACACCACCATTTCCCAATCCCTTTATCTCATAAGCTTAGGCACCAATGACTTCCTAGAAAACTACTTCCTCCTCCCTCCAAGATCCTCTGAGTTTTCACTCCAAGACTATCAAAATTTTCTTGCCCGAGCCGCTGAGGGGTTTGTCCGAGAGCTCTATGCCCTCGGGGCTCGCAAGATGTCGATCGGGGGGCTCCCGCCGATGGGGTGCCTACCATTGGAGAGGAGCTCAAGGTTGGTTTTTGGAGGTGGTGAATGTGTTGAGAAGTACAATAGAGTTGCAAGAGATTTCAATGCCAAATTGATGGGGTTAGTGGAGATGATGGAGGAGGAATTGGAAGGGATTCAGATTGTGTTTTCCAATCCATTTGATGTTATCTATGATATGATTCAGCATCCTAGTTACTTCGGGTTTAGCAATTCAGCAAGAGCATGTTGTGGAACAGGTAGATTTGAGATGGGTTTCATGTGCTCCAAATTGAATCCATTTACATGTTCTGATGCTAACAAATATGTGTTTTGGGATGCTTTTCATCCCACACAAAAAGCTAATTCCATTATAGCAAATCATATTGTCCAAACTTATCTTTCAATCTTTCTTTGA 1035 40.97 MILILLVEKKRVEGNKVVVPSIIVFGDSSVDSGNNNHISTILRSDFAPYGRDFEGGKATGRFSNGKIVTDFISEAFGIKPTIPAYLDPSYNITHFASGVCFASAGTGYDNATSDVFSVIPLWKELQYYKEYQKKLRDYLGPSKANTTISQSLYLISLGTNDFLENYFLLPPRSSEFSLQDYQNFLARAAEGFVRELYALGARKMSIGGLPPMGCLPLERSSRLVFGGGECVEKYNRVARDFNAKLMGLVEMMEEELEGIQIVFSNPFDVIYDMIQHPSYFGFSNSARACCGTGRFEMGFMCSKLNPFTCSDANKYVFWDAFHPTQKANSIIANHIVQTYLSIFL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10621452 10625209 - CcPI632755_09g011060.1 Cco09g1106 187563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1106 344 FunFam GDSL esterase/lipase APG 11 340 - -
Cco09g1106 344 Pfam GDSL-like Lipase/Acylhydrolase 22 335 IPR001087 GO:0016788(InterPro)
Cco09g1106 344 CDD SGNH_plant_lipase_like 20 339 IPR035669 -
Cco09g1106 344 SUPERFAMILY SGNH hydrolase 21 339 - -
Cco09g1106 344 Gene3D SGNH hydrolase 10 341 IPR036514 -
Cco09g1106 344 PANTHER GDSL ESTERASE/LIPASE EXL3 17 335 IPR050592 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1106 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2129 Cco-Chr4:35126571 Cco09g1106 Cco-Chr9:10621452 4.40E-74 dispersed
Cco04g2130 Cco-Chr4:35133389 Cco09g1106 Cco-Chr9:10621452 2.80E-68 dispersed
Cco07g1516 Cco-Chr7:29185005 Cco09g1106 Cco-Chr9:10621452 4.80E-44 dispersed
Cco09g0131 Cco-Chr9:1154590 Cco09g1106 Cco-Chr9:10621452 1.10E-45 dispersed
Cco09g1106 Cco-Chr9:10621452 Cco09g2288 Cco-Chr9:37100358 6.00E-126 dispersed
Cco09g1106 Cco-Chr9:10621452 Cco04g1817 Cco-Chr4:33035719 1.80E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91