Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1113 ATGGCGTATACATTGGAATCGTGGACGAAGGAATACAATGAAGCTTTGAAACTGTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCGGAAGCTCAGCGTCATGGCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTGGACAACCGAGGTCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCACGATTACGGCGAGTGCAGAAGAGGCTGGCAATACTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTTGTCAAGTATTTGTAA 702 42.74 MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHGSAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLVKYL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10680226 10682108 + CcPI632755_09g011130.1 Cco09g1113 187570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1113 233 CDD SNARE_Qc 140 197 - -
Cco09g1113 233 PANTHER SYNTAXIN 11 219 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco09g1113 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Cco09g1113 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Cco09g1113 233 FunFam syntaxin-51 isoform X2 139 201 - -
Cco09g1113 233 Gene3D - 139 201 - -
Cco09g1113 233 Pfam SNARE domain 174 224 IPR000727 -
Cco09g1113 233 SMART tSNARE_6 132 199 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1113 Cco-Chr9:10680226 Cco10g0456 Cco-Chr10:5415548 1.90E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1113 K08503 - csv:101208669 420.624