Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1122 ATGACAATCGACCACCACTGCGATCAAACCACCGACGATGATTCCCACCATCTCCATCCTACTCTTCCCACGCCAGTTGTCGCCAATGGCACCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCGGTCGTTGACAACGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACGTTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAACATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTACACGATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCACCATCATTTTCTTGTTCCAAAAGGTAA 702 46.72 MTIDHHCDQTTDDDSHHLHPTLPTPVVANGTDCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDYTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPPSFSCSKR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10805440 10808022 + CcPI632755_09g011220.1 Cco09g1122 187579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1122 233 MobiDBLite consensus disorder prediction 1 20 - -
Cco09g1122 233 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 230 IPR020422 GO:0006470(InterPro)
Cco09g1122 233 Pfam Tyrosine phosphatase family 42 221 IPR004861 -
Cco09g1122 233 PANTHER TYROSINE-PROTEIN PHOSPHATASE 26 227 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cco09g1122 233 ProSitePatterns Tyrosine specific protein phosphatases active site. 166 176 IPR016130 GO:0016311(InterPro)
Cco09g1122 233 Gene3D Protein tyrosine phosphatase superfamily 40 220 IPR029021 -
Cco09g1122 233 PRINTS Plant and fungal dual specificity phosphatase signature 41 58 IPR020428 GO:0016791(InterPro)
Cco09g1122 233 PRINTS Plant and fungal dual specificity phosphatase signature 78 91 IPR020428 GO:0016791(InterPro)
Cco09g1122 233 PRINTS Plant and fungal dual specificity phosphatase signature 97 111 IPR020428 GO:0016791(InterPro)
Cco09g1122 233 PRINTS Plant and fungal dual specificity phosphatase signature 144 158 IPR020428 GO:0016791(InterPro)
Cco09g1122 233 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 218 IPR029021 -
Cco09g1122 233 CDD PFA-DSP_Siw14 40 217 - -
Cco09g1122 233 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1073 Cco-Chr3:18766671 Cco09g1122 Cco-Chr9:10805440 6.50E-56 dispersed
Cco02g1936 Cco-Chr2:32245867 Cco09g1122 Cco-Chr9:10805440 2.80E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1122 K18045 - csv:101209768 361.303