Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1167 ATGGGTGGCAGTGAGATGAATAAATCCACGAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAGCAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAGCTCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCGGAGGCTTCTGGGAATACTCCAAGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCCATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACGGCATTCCGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAGCTGTCTCAGCGTGCGGAAGCTTTGAAGGAAGAAAATGCAAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGATGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTCGCTAAAGGAACTGACCCATGTCGTCTCGGGACTGTTGATTCTTACGGAGGCTTCATCTTTAACCCGAAGCTCTGTGTAATTTCGGGTGTAATCAGCGACGTTTCCGTCGTGATTCCGTCGGCCGGCGGTCTTCGGTCACCGGAACTGAGACACTGCCATGCACCTATCGATTCTAAGAGTTCCATTTCCGCTGGATTCTTTAGATTTTGCATGAGTACAAGCATCATATGGAATCATACTGTGGAAAGTGAGGCAGTAAAATTGACAAGTCGTCCTCAATTTCAGCAACAGCATGCTGCCCCTCCTCGGCAGCATTATGCTAATCCAATCTCCCACACTGATTGGTTGGCTATGATGACTGCATCATATGGGGGCTGGATTGATCTTTATCACCTTCCGGTCACTCTTTGGAATGAAGCCATATTCAAATTTATTGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGGTCTAAATCTCTCATTTGCCCGCATCAAAATCAAGGAAAATCAATGTGGCCTCATTCCTTGTGAAGTTCGCCTCCCCATTGAAGTCGCCGGCACTGAAATCACGTTTCTATCACTGCTCCCAATCTGA 1809 46.27 MGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLAASPQAHTYMWGVQPIMPPYGAPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPSNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKMRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKGTDPCRLGTVDSYGGFIFNPKLCVISGVISDVSVVIPSAGGLRSPELRHCHAPIDSKSSISAGFFRFCMSTSIIWNHTVESEAVKLTSRPQFQQQHAAPPRQHYANPISHTDWLAMMTASYGGWIDLYHLPVTLWNEAIFKFIGDFCGGYLHPSNQTERGLNLSFARIKIKENQCGLIPCEVRLPIEVAGTEITFLSLLPI 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11316447 11331331 + CcPI632755_09g011670.1 Cco09g1167 187624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1167 602 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 MobiDBLite consensus disorder prediction 369 390 - -
Cco09g1167 602 Pfam Domain of unknown function (DUF4283) 524 571 IPR025558 -
Cco09g1167 602 MobiDBLite consensus disorder prediction 1 39 - -
Cco09g1167 602 Gene3D - 302 356 - -
Cco09g1167 602 MobiDBLite consensus disorder prediction 1 41 - -
Cco09g1167 602 MobiDBLite consensus disorder prediction 145 176 - -
Cco09g1167 602 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Cco09g1167 602 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 389 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cco09g1167 602 MobiDBLite consensus disorder prediction 362 405 - -
Cco09g1167 602 MobiDBLite consensus disorder prediction 112 223 - -
Cco09g1167 602 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g1167 602 MobiDBLite consensus disorder prediction 280 324 - -
Cco09g1167 602 Pfam Disordered region downstream of MFMR 134 267 - -
Cco09g1167 602 Coils Coil 312 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1697 Cco-Chr4:32135231 Cco09g1167 Cco-Chr9:11316447 5.10E-30 dispersed
Cco01g1046 Cco-Chr1:13591528 Cco09g1167 Cco-Chr9:11316447 5.60E-15 transposed
Cco03g1086 Cco-Chr3:19205847 Cco09g1167 Cco-Chr9:11316447 2.80E-06 transposed
Cco05g0135 Cco-Chr5:1089703 Cco09g1167 Cco-Chr9:11316447 7.00E-28 transposed
Cco10g0134 Cco-Chr10:1220216 Cco09g1167 Cco-Chr9:11316447 6.00E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59958 PF16596 MFMR_assoc 1.20E-44 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1167 K09060 - csv:101214217 749.584