Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1174 ATGGAGCTATTTCCAGCACAACCAGATTTATCACTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCATCTTGGAGAAGAACAAGTAGTTCTTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTTAGTTTGGAGTCTTCTTCTAAATCCACTCCCAAACATCATCATCCCCATCATCATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTCTCAAATTTAACCCAAATTAACCATCATCAATACCCAAACATTTCTCCTCCTCCTAGTACTCCTAATCATCTTCTTCATCATCATCATCATCGTTATCCCGCTCTCGATACCACTGCACACCTTTTCGAAACCCTAAACAAAACCCACCACCGACCCGCCATTTTTCACCAGACGCCATCACTTGACCCGCCACCACCTCCCTCGCTCCCGTTTCCGGGCCAAACCAATGGGCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCAGTGTACCATCAGACGAATAACCCCTCCGGCACCGGAAACGGCGGTGTTGTCACTCCCTCCGCTGCTGGTCACGGCCAGATTATGATGAGATCGAGATTCTTGTCGAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCTCGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACTTTAGCTCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGATACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAGCCATGGGAAGAAAAAATGACAACTCAATTCAACAAACAACAAGGCAAAACCCTCACCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATCTTTGTGAAATTGAAGTTGAAGTGAAGTTGGTGCCTCATAGGGGAAAAAAAAAAGAAAAAAGGGAAATTGATTTTAAAGAAAAGAAAAAAAGAGAGGTAAAGAAAGACAAGCAGACAAGAAAGAAAGAAAGCAAGAAAAAAGCAGAAAAGAAGAGAAAAGCCCAAATCTATAACTCACAAATACCGCTTACGTCTGTTTGGAATGATTTTGCAATGGTTTCAAGGCAAGAAATGCAGTTGTTGTTTAGTCTCGAGACCAAGAGTAAGTTTAAATTATGA 1416 41.95 MELFPAQPDLSLQISPPNTNKPSSSWRRTSSSSQEEVDLGFWNNLSLESSSKSTPKHHHPHHHHLHHLHPHSCFDLSLSNLTQINHHQYPNISPPPSTPNHLLHHHHHRYPALDTTAHLFETLNKTHHRPAIFHQTPSLDPPPPPSLPFPGQTNGQDLGFLRPIRGIPVYHQTNNPSGTGNGGVVTPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRKNDNSIQQTTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCEIEVEVKLVPHRGKKKEKREIDFKEKKKREVKKDKQTRKKESKKKAEKKRKAQIYNSQIPLTSVWNDFAMVSRQEMQLLFSLETKSKFKL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11466671 11471903 - CcPI632755_09g011740.1 Cco09g1174 187631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1174 471 MobiDBLite consensus disorder prediction 11 32 - -
Cco09g1174 471 Gene3D - 213 270 - -
Cco09g1174 471 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 384 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco09g1174 471 MobiDBLite consensus disorder prediction 306 326 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 349 371 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 408 422 - -
Cco09g1174 471 FunFam Myb family transcription factor 212 270 - -
Cco09g1174 471 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677(InterPro)
Cco09g1174 471 MobiDBLite consensus disorder prediction 408 432 - -
Cco09g1174 471 Pfam Myb-like DNA-binding domain 215 266 IPR001005 -
Cco09g1174 471 MobiDBLite consensus disorder prediction 49 68 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 1 32 - -
Cco09g1174 471 Coils Coil 395 415 - -
Cco09g1174 471 SUPERFAMILY Homeodomain-like 211 267 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2205 Cco-Chr5:30820185 Cco09g1174 Cco-Chr9:11466671 2.70E-30 dispersed
Cco08g1731 Cco-Chr8:28589460 Cco09g1174 Cco-Chr9:11466671 1.70E-32 dispersed
Cco09g1174 Cco-Chr9:11466671 Cco11g0081 Cco-Chr11:859632 3.70E-17 dispersed
Cco01g0914 Cco-Chr1:10146012 Cco09g1174 Cco-Chr9:11466671 8.00E-34 transposed
Cco05g1222 Cco-Chr5:11476135 Cco09g1174 Cco-Chr9:11466671 9.20E-42 transposed
Cco10g0139 Cco-Chr10:1324670 Cco09g1174 Cco-Chr9:11466671 1.90E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59960 None None None None Cco TF