Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1174 ATGGAGCTATTTCCAGCACAACCAGATTTATCACTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCATCTTGGAGAAGAACAAGTAGTTCTTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTTAGTTTGGAGTCTTCTTCTAAATCCACTCCCAAACATCATCATCCCCATCATCATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTCTCAAATTTAACCCAAATTAACCATCATCAATACCCAAACATTTCTCCTCCTCCTAGTACTCCTAATCATCTTCTTCATCATCATCATCATCGTTATCCCGCTCTCGATACCACTGCACACCTTTTCGAAACCCTAAACAAAACCCACCACCGACCCGCCATTTTTCACCAGACGCCATCACTTGACCCGCCACCACCTCCCTCGCTCCCGTTTCCGGGCCAAACCAATGGGCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCAGTGTACCATCAGACGAATAACCCCTCCGGCACCGGAAACGGCGGTGTTGTCACTCCCTCCGCTGCTGGTCACGGCCAGATTATGATGAGATCGAGATTCTTGTCGAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCTCGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACTTTAGCTCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGATACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAGCCATGGGAAGAAAAAATGACAACTCAATTCAACAAACAACAAGGCAAAACCCTCACCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATCTTTGTGAAATTGAAGTTGAAGTGAAGTTGGTGCCTCATAGGGGAAAAAAAAAAGAAAAAAGGGAAATTGATTTTAAAGAAAAGAAAAAAAGAGAGGTAAAGAAAGACAAGCAGACAAGAAAGAAAGAAAGCAAGAAAAAAGCAGAAAAGAAGAGAAAAGCCCAAATCTATAACTCACAAATACCGCTTACGTCTGTTTGGAATGATTTTGCAATGGTTTCAAGGCAAGAAATGCAGTTGTTGTTTAGTCTCGAGACCAAGAGTAAGTTTAAATTATGA 1416 41.95 MELFPAQPDLSLQISPPNTNKPSSSWRRTSSSSQEEVDLGFWNNLSLESSSKSTPKHHHPHHHHLHHLHPHSCFDLSLSNLTQINHHQYPNISPPPSTPNHLLHHHHHRYPALDTTAHLFETLNKTHHRPAIFHQTPSLDPPPPPSLPFPGQTNGQDLGFLRPIRGIPVYHQTNNPSGTGNGGVVTPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRKNDNSIQQTTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCEIEVEVKLVPHRGKKKEKREIDFKEKKKREVKKDKQTRKKESKKKAEKKRKAQIYNSQIPLTSVWNDFAMVSRQEMQLLFSLETKSKFKL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11466671 11471903 - CcPI632755_09g011740.1 Cco09g1174 187631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1174 471 MobiDBLite consensus disorder prediction 11 32 - -
Cco09g1174 471 Gene3D - 213 270 - -
Cco09g1174 471 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 384 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco09g1174 471 MobiDBLite consensus disorder prediction 306 326 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 349 371 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 408 422 - -
Cco09g1174 471 FunFam Myb family transcription factor 212 270 - -
Cco09g1174 471 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677(InterPro)
Cco09g1174 471 MobiDBLite consensus disorder prediction 408 432 - -
Cco09g1174 471 Pfam Myb-like DNA-binding domain 215 266 IPR001005 -
Cco09g1174 471 MobiDBLite consensus disorder prediction 49 68 - -
Cco09g1174 471 MobiDBLite consensus disorder prediction 1 32 - -
Cco09g1174 471 Coils Coil 395 415 - -
Cco09g1174 471 SUPERFAMILY Homeodomain-like 211 267 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2205 Cco-Chr5:30820185 Cco09g1174 Cco-Chr9:11466671 2.70E-30 dispersed
Cco08g1731 Cco-Chr8:28589460 Cco09g1174 Cco-Chr9:11466671 1.70E-32 dispersed
Cco09g1174 Cco-Chr9:11466671 Cco11g0081 Cco-Chr11:859632 3.70E-17 dispersed
Cco01g0914 Cco-Chr1:10146012 Cco09g1174 Cco-Chr9:11466671 8.00E-34 transposed
Cco05g1222 Cco-Chr5:11476135 Cco09g1174 Cco-Chr9:11466671 9.20E-42 transposed
Cco10g0139 Cco-Chr10:1324670 Cco09g1174 Cco-Chr9:11466671 1.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59960 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1174 - - - 0.0