Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1176 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGCGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAGTTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATTGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTTAGAGATCAGTTAGAACAAGTTTGCTCCTTGACCACAAGATACACTGGTCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCCGAAATGATGCCGTTGCCCTCGATGCTCCCGCCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCGTCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATTCTAAATCTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGCGATAGCGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCTACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCGATCGACAGCTTCCATGACAGTCTTCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAATGTGAGAGAATTGCAAGTCTCATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAAAACCTAATGAAACTCGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCATGGACGGCGTTATCCGATTCTCCTGACGATACCATTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCAACCACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGACGAACGATGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCAGCAGTCTCGTCGTCTACGCGACGATTGACGTCGATTCGATCCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCGTTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCTGGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGCGTAACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACAGTAATAACGTGGCCGAGCCGAATAATGCGCCGCCGCCGCCTCCGCCGCCCCCCAAGCAATAA 2421 46.8 MYGDCQVMTSNMRGNMVSSESLFSSPIQNPSFNFMSNFQHFPSIVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMPLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEILNLEEHGRMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTIRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERCRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSSSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSVVPAIGSTVGGHPAPPPEDGTTNANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENSNNVAEPNNAPPPPPPPPKQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11579859 11587885 - CcPI632755_09g011760.1 Cco09g1176 187633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1176 806 Gene3D - 336 517 IPR023393 -
Cco09g1176 806 Gene3D - 78 161 - -
Cco09g1176 806 Pfam Homeodomain 93 148 IPR001356 GO:0003677(InterPro)
Cco09g1176 806 CDD START_ArGLABRA2_like 287 518 - -
Cco09g1176 806 SUPERFAMILY Bet v1-like 285 521 - -
Cco09g1176 806 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Cco09g1176 806 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Cco09g1176 806 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco09g1176 806 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Cco09g1176 806 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Cco09g1176 806 MobiDBLite consensus disorder prediction 785 806 - -
Cco09g1176 806 Pfam START domain 293 519 IPR002913 GO:0008289(InterPro)
Cco09g1176 806 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Cco09g1176 806 Coils Coil 149 169 - -
Cco09g1176 806 FunFam Homeobox-leucine zipper protein HDG1 79 166 - -
Cco09g1176 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 778 IPR042160 -
Cco09g1176 806 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Cco09g1176 806 SUPERFAMILY Bet v1-like 556 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0219 Cco-Chr5:1701386 Cco09g1176 Cco-Chr9:11579859 1.80E-143 dispersed
Cco05g0954 Cco-Chr5:8334654 Cco09g1176 Cco-Chr9:11579859 1.00E-149 dispersed
Cco05g1240 Cco-Chr5:11911439 Cco09g1176 Cco-Chr9:11579859 4.10E-145 dispersed
Cco07g1389 Cco-Chr7:27966644 Cco09g1176 Cco-Chr9:11579859 6.90E-122 dispersed
Cco09g0190 Cco-Chr9:1755239 Cco09g1176 Cco-Chr9:11579859 7.10E-108 dispersed
Cco09g1176 Cco-Chr9:11579859 Cco10g0249 Cco-Chr10:2652289 5.40E-08 dispersed
Cco09g1176 Cco-Chr9:11579859 Cco06g0006 Cco-Chr6:87865 1.40E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59962 PF01852 START 3.10E-43 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1176 - - - 0.0