Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1180 ATGAGAAAGACCGGAAGAGGAGGCCGGTGGGCTGATCAGAATCGAACCCAAGAGGTTTGGGTCGCCAAACACACGAATCAAACACACAATCACGCTTCTACTTCCGGCTCACAACGCTCGGACCTCGGTAATCCTCCTTCTACCGGTCGTAATTTCAACTACGAGCATCGGAATCGCCGCCGCCCTCGTCCCCAACCTGTCCAGAAAGCGGAGGTGAGTGCTTTGGCTGATGGAATTCAATCTTTCACTTGCGACGAAAAGACTGTGGAAGTCGATGTTGCGAATTCGAACTGTGAGATTAAAGACCAGAAAGCTGGAGATTCTGACTCAAGTGAGGCTGCGGATGATGTTTACAGTAGGTTAGAGATGCTGCAGCGCAGTTCCGAGGCGCCGGAGTTGTCGGAGGAGCAGCTAAGGATTAATGATCAGTTGCAGGAAGATGAGTTGTTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAATATAAAGGGCAGCGCCGTTTCCAGATTTTCATACACATTGAGAATCCTGGTGATATTACTGTTACTGCAAAGCTTAATTCATCTGGTTCTCTTGAGATCAAAAGTCCTAATTCAGATGAATTTTCCTGTTCTTTCAAAGTCAAGTATCTTAACCCCATTGTTTTGACCTGTTTATTACCAAAATCATATCCTAGTCACCTACCTCCATATTATACAATCTCTATTCAGTGGTTGGACTCTGCTAGAATTTCCAGTCTTTGCTCTGTATTGGATGGGATATGGACTGAACAGGCGGGGCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAGATGTCATCTCTGGCTTATCTTCAGTTAGATAAAGAAATTACACTTGGTCCTTACGACAAGGGACGTTCAGGAGATACTCGGGCAGTTTCAGGAAGTATTTCTCCGGAAGTTGATGTTCCTGCAATAATGAATTATGACAATCAGAGACGTGATGAGGACTTCTGCATGAATTTGCAGGAATGCTGCATCTGTTTAAGTCAGTATGCAGGTACAAAGTTTGTTAGATTGCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAGACATACTCAAGCATGCATGTTAAGGAAGGCACCGTAAGCAAACTCAAATGTCCAGATACCAAATGCGATGTTATGGTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGTGATGAGGAGTTTGAAAGATGGGAATCCATGATGCTCACAAAAACACTGGAATCGATGTCAGATGTGGTCAATTGCCCAAGGTGTGAAACCCCTTGCCTAGAGGACGTAGATCATGATGCTCAATGCTCTAAGTGTTACTTCAGTTTTTGTACACTCTGTAGCGAGCGACGTCATGTCGGAATTCAATGTATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAATTCATCTCAGTTAGGTAGTGAGCAAAGACAAAAGGAACGTGAGATGATAAATGAGCTTATTAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGCCCATCTTGTAAAATGGCAATATCGCGGACTGAGGGTTGCAATAAGATGGTTTGCAATAACTGCGGACAGTATTTTTGTTACCGCTGTAGCAAGGCAATTGATGGATATAACCATTTCAGGGAGGGGTCATGTGAATTGTTCCCACAAGAAGCCATTCAACAGTGGGAAGAGCGCATGAATGCACGACAAGTGTTGGGCCAGATTCAAGCTGAACTTTTTCCTGAAAATGGTCATCCATGTCCTAATTGTGCTCAACTTAATGCCAAGGTTGGGAATAACAATCACATACGTTGCTGCGCAGCTCCCAGCATTATGGACCCAAAGGATGCAAACAACACACAGTGGGTTGATTTTACTTCTACACTTCCAAAAGCTTATACACATATTATTCAACAAAACAAAAGACATCAACATCCCTAA 1950 43.49 MRKTGRGGRWADQNRTQEVWVAKHTNQTHNHASTSGSQRSDLGNPPSTGRNFNYEHRNRRRPRPQPVQKAEVSALADGIQSFTCDEKTVEVDVANSNCEIKDQKAGDSDSSEAADDVYSRLEMLQRSSEAPELSEEQLRINDQLQEDELLALESIYGENVYILDEYKGQRRFQIFIHIENPGDITVTAKLNSSGSLEIKSPNSDEFSCSFKVKYLNPIVLTCLLPKSYPSHLPPYYTISIQWLDSARISSLCSVLDGIWTEQAGQEVVYQWVEWLQMSSLAYLQLDKEITLGPYDKGRSGDTRAVSGSISPEVDVPAIMNYDNQRRDEDFCMNLQECCICLSQYAGTKFVRLPCKHYFCWKCMETYSSMHVKEGTVSKLKCPDTKCDVMVPPGLLKQLLGDEEFERWESMMLTKTLESMSDVVNCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIQCMTPEMKLRLLEERQNSSQLGSEQRQKEREMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYNHFREGSCELFPQEAIQQWEERMNARQVLGQIQAELFPENGHPCPNCAQLNAKVGNNNHIRCCAAPSIMDPKDANNTQWVDFTSTLPKAYTHIIQQNKRHQHP 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11639237 11644164 - CcPI632755_09g011800.1 Cco09g1180 187637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1180 649 ProSiteProfiles RWD domain profile. 147 282 IPR006575 GO:0005515(InterPro)
Cco09g1180 649 SUPERFAMILY RING/U-box 405 467 - -
Cco09g1180 649 SMART RWD2001b 147 282 IPR006575 GO:0005515(InterPro)
Cco09g1180 649 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 152 551 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cco09g1180 649 Pfam Ring finger domain 335 372 IPR001841 -
Cco09g1180 649 SUPERFAMILY RING/U-box 334 418 - -
Cco09g1180 649 MobiDBLite consensus disorder prediction 1 69 - -
Cco09g1180 649 CDD Rcat_RBR_RNF14 495 557 IPR047548 GO:0008270(InterPro)
Cco09g1180 649 CDD BRcat_RBR_RNF14 416 467 - -
Cco09g1180 649 SMART ring_2 510 593 IPR001841 -
Cco09g1180 649 SMART ring_2 337 384 IPR001841 -
Cco09g1180 649 Pfam IBR domain, a half RING-finger domain 405 463 IPR002867 GO:0008270(InterPro)
Cco09g1180 649 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Cco09g1180 649 Gene3D - 482 583 - -
Cco09g1180 649 ProSiteProfiles TRIAD supradomain profile. 333 559 IPR044066 -
Cco09g1180 649 SUPERFAMILY UBC-like 141 276 IPR016135 -
Cco09g1180 649 Pfam RWD domain 143 276 IPR006575 GO:0005515(InterPro)
Cco09g1180 649 Gene3D Ubiquitin Conjugating Enzyme 134 285 IPR016135 -
Cco09g1180 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 420 IPR013083 -
Cco09g1180 649 SUPERFAMILY RING/U-box 496 549 - -
Cco09g1180 649 MobiDBLite consensus disorder prediction 18 52 - -
Cco09g1180 649 CDD RING-HC_ITT1-like 334 390 - -
Cco09g1180 649 SMART ibrneu5 405 463 IPR002867 GO:0008270(InterPro)
Cco09g1180 649 SMART ibrneu5 492 554 IPR002867 GO:0008270(InterPro)
Cco09g1180 649 Pfam IBR domain 507 541 - -
Cco09g1180 649 FunFam RBR-type E3 ubiquitin transferase 478 584 - -
Cco09g1180 649 ProSiteProfiles Zinc finger RING-type profile. 337 385 IPR001841 -
Cco09g1180 649 FunFam RBR-type E3 ubiquitin transferase 332 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1180 K11971 - - csv:101211646 1129.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30