Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g1181 | ATGAGAAACCATGGGAATACAGTTTCATATGATCATGAAGAAGAAAATGAAGATGAAGTTAGTATGAAGAAGAGGAAGAATGATGAAGAAGAAGAAGAAGAAGAAGAAGATGATGGGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGATTATTTTCTCATGAGTTTTGGTTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGATGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTCTATATCTCAGTGTGGTTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAGAGGCAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCAATGTTAAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACTAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAGAAAGTAGGGAACTTTTTGCATTATATAAGCCGGTTTATATCAGGGTTTATTATCGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCCCTTGCTGGTGGTCTCTATGCATTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTTTAGGAAATGTAAGAACAGTTCAAGCCTTTGCTGGGGAAGAAAGAGCAGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGTTCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGCTAATTTGGTTTACCAGCATTGTTGTCCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCCGCACCAGACATTTCCGCCTTTGTTCGAGCAAAAGCAGCAGCATATCCTATTTTTCAGATGATAGAGAGGAACACAGTTAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTCAATAAGCTTGATGGTCATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTTTGGATGTAATTATATTTAATAAGTTATCTCTTGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGATCAGGAAAGAGCACGGTGATATCTTTGATTGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTGTTGGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTAAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAGGACATAACGCGTGCAGCCAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATGGTTAAAAATCCATCAATCTTGTTGCTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTACAAGAGGCACTCGATCGCGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTTTATCTACCATACGGAATGCAGATGTGATTGCTGTCGTTCAAGAAGGAAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATCTCAAAGCCAGACAGCGTCTATGCATCACTTGTCCAGTTCCAAGAAACATCATCTCTGCAATGCCATCCCTCGATTGGGCAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACCACGAGCTTTGGTGCAAGTTTTCGCTCTGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTCGGTGTCATTGGAGCATTCGTTGCAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCATTTTACATGGACTGGAATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGCGGTGCGGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAAAAATGTTCCATGCTATTCTGAGAAACGAGATAGGATGGTTCGATGATATGAACAACACAAGTGCTATGCTCTCATCACGTCTAGAAACTGATGCAACTTTATTACGAACTATCGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCTTTCATTTTGAATTGGAGAATCACTCTAGTTGTCTTGGCCACTTATCCACTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGGACTGTTGCTGCATTTTGTTCTGAGCAGAAGGTCCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTTTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTACGGTCTAGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCATTGGCCCCTGACCTTTTAAAGGGAAACCAGATGGTGGCATCCGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCAGGTGATGTTGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATCGGCCTCGTCCAACAGGAACCGGCTCTTTTTGCCACGTCAATTTATGAGAACATTCTTTATGGCAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCAACAAAAGTCGGGGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCGGAAATACTACTACTCGACGAAGCTACGAGTGCTCTCGACGTCGAATCGGAACGCGTGGTTCAGCAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAGATGGGAAGATTGTAGAACAAGGAACTCATTCAAGCCTTTCCGACAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA | 3819 | 42.55 | MRNHGNTVSYDHEEENEDEVSMKKRKNDEEEEEEEEDDGKKKKKKKKEQQNKVAFYKLFAFADFYDYFLMSFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEDAAPKVAKYSLDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLIWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRLDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAMVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETSSLQCHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSARRLYSMVGPDWMYGIVGVIGAFVAGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDMNNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSDNKNGAYYKLINIQQQQQRQ | 1272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11672306 | 11681167 | + | CcPI632755_09g011810.1 | Cco09g1181 | 187638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g1181 | 1272 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 709 | 995 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g1181 | 1272 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 698 | 1013 | - | - | |
| Cco09g1181 | 1272 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cco09g1181 | 1272 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cco09g1181 | 1272 | SUPERFAMILY | ABC transporter transmembrane region | 687 | 1009 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g1181 | 1272 | Coils | Coil | 12 | 52 | - | - | |
| Cco09g1181 | 1272 | Gene3D | ABC transporter type 1, transmembrane domain | 9 | 102 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g1181 | 1272 | CDD | ABC_MTABC3_MDL1_MDL2 | 394 | 632 | - | - | |
| Cco09g1181 | 1272 | ProSitePatterns | ABC transporters family signature. | 1167 | 1181 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 72 | 359 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g1181 | 1272 | Pfam | ABC transporter transmembrane region | 709 | 980 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g1181 | 1272 | Pfam | ABC transporter transmembrane region | 75 | 342 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g1181 | 1272 | Pfam | ABC transporter | 1047 | 1195 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | Pfam | ABC transporter | 413 | 561 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | SMART | AAA_5 | 1055 | 1227 | IPR003593 | GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | SMART | AAA_5 | 421 | 613 | IPR003593 | GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | PANTHER | ABC TRANSPORTER B FAMILY | 16 | 655 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cco09g1181 | 1272 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 70 | 367 | - | - | |
| Cco09g1181 | 1272 | FunFam | ABC transporter B family member 4 | 1018 | 1271 | - | - | |
| Cco09g1181 | 1272 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 394 | 630 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | FunFam | ABC transporter B family member 19 | 384 | 633 | - | - | |
| Cco09g1181 | 1272 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 386 | 632 | IPR027417 | - | |
| Cco09g1181 | 1272 | CDD | ABC_MTABC3_MDL1_MDL2 | 1028 | 1263 | - | - | |
| Cco09g1181 | 1272 | Gene3D | ABC transporter type 1, transmembrane domain | 119 | 1004 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g1181 | 1272 | Gene3D | - | 392 | 645 | IPR027417 | - | |
| Cco09g1181 | 1272 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1028 | 1264 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g1181 | 1272 | Gene3D | - | 1019 | 1272 | IPR027417 | - | |
| Cco09g1181 | 1272 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1022 | 1266 | IPR027417 | - | |
| Cco09g1181 | 1272 | SUPERFAMILY | ABC transporter transmembrane region | 58 | 364 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g1181 | 1272 | ProSitePatterns | ABC transporters family signature. | 533 | 547 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2026 | Cco-Chr2:33225499 | Cco09g1181 | Cco-Chr9:11672306 | 1.20E-60 | dispersed | |
| Cco06g1588 | Cco-Chr6:26435523 | Cco09g1181 | Cco-Chr9:11672306 | 2.80E-33 | dispersed | |
| Cco09g1181 | Cco-Chr9:11672306 | Cco09g2035 | Cco-Chr9:34649838 | 0.00E+00 | dispersed | |
| Cco09g1181 | Cco-Chr9:11672306 | Cco10g1994 | Cco-Chr10:33466359 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g1181 | K05658 | - | csv:101219304 | 2255.33 |