Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1188 | ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCGTCATCTACGACACGATCTCCGCAACACCGAACACCGAACACGCCCTCCGCGACTCATCGGAGAATACTTTTCTCTCCGACGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGAGAGCAACCGAGCGACACCGTCATCAACAACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCAGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTCAAGAATAAGAAGGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGATTTCCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA | 921 | 41.26 | MSLDALSSNDLFNFVIYDTISATPNTEHALRDSSENTFLSDDKCSKPYSRKRRPSEGESNRATPSSTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQEQEINEDSRIRRNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11808089 | 11810713 | - | CcPI632755_09g011880.1 | Cco09g1188 | 187645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1188 | 306 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Cco09g1188 | 306 | Gene3D | - | 81 | 173 | IPR036638 | GO:0046983(InterPro) | |
Cco09g1188 | 306 | Coils | Coil | 139 | 159 | - | - | |
Cco09g1188 | 306 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 91 | 142 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1188 | 306 | PANTHER | MAX DIMERIZATION, MAD | 54 | 298 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco09g1188 | 306 | MobiDBLite | consensus disorder prediction | 31 | 92 | - | - | |
Cco09g1188 | 306 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 143 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1188 | 306 | SMART | finulus | 97 | 148 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1188 | 306 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 90 | 159 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1743 | Cco-Chr3:32131551 | Cco09g1188 | Cco-Chr9:11808089 | 1.60E-40 | dispersed | |
Cco05g1037 | Cco-Chr5:9146598 | Cco09g1188 | Cco-Chr9:11808089 | 1.10E-21 | dispersed | |
Cco09g1188 | Cco-Chr9:11808089 | Cco08g1287 | Cco-Chr8:24643432 | 1.30E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59964 | PF00010 | HLH | 1.00E-10 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1188 | - | - | - | 0.0 |