Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1188 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCGTCATCTACGACACGATCTCCGCAACACCGAACACCGAACACGCCCTCCGCGACTCATCGGAGAATACTTTTCTCTCCGACGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGAGAGCAACCGAGCGACACCGTCATCAACAACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCAGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTCAAGAATAAGAAGGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGATTTCCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA 921 41.26 MSLDALSSNDLFNFVIYDTISATPNTEHALRDSSENTFLSDDKCSKPYSRKRRPSEGESNRATPSSTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQEQEINEDSRIRRNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11808089 11810713 - CcPI632755_09g011880.1 Cco09g1188 187645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1188 306 MobiDBLite consensus disorder prediction 34 58 - -
Cco09g1188 306 Gene3D - 81 173 IPR036638 GO:0046983(InterPro)
Cco09g1188 306 Coils Coil 139 159 - -
Cco09g1188 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983(InterPro)
Cco09g1188 306 PANTHER MAX DIMERIZATION, MAD 54 298 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco09g1188 306 MobiDBLite consensus disorder prediction 31 92 - -
Cco09g1188 306 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983(InterPro)
Cco09g1188 306 SMART finulus 97 148 IPR011598 GO:0046983(InterPro)
Cco09g1188 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 159 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1743 Cco-Chr3:32131551 Cco09g1188 Cco-Chr9:11808089 1.60E-40 dispersed
Cco05g1037 Cco-Chr5:9146598 Cco09g1188 Cco-Chr9:11808089 1.10E-21 dispersed
Cco09g1188 Cco-Chr9:11808089 Cco08g1287 Cco-Chr8:24643432 1.30E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59964 PF00010 HLH 1.00E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1188 - - - 0.0