Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1216 ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTGCGCCGCCACAGCCTCAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTATGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCATCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTCTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACGATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCTAAATCTAGTGTTGTAATTGAAACTCCAAGCTCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGCCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAACTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCGGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCGGGTGTTTGCGCTGGCGATTCTGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACATAAACCATAGTGATATCGAAACCGATATCGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCCGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG 2037 47.03 MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVAPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAIDEVVTDTEWFYLVSMTQSFASGVGLPGQAFLDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNDLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPTPSTTNSQPISKITTETIENPKSSVVIETPSSVVPPPSQKTHRQPQPIQTQSFFTNRELNFSELGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGVCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSSNKDSCISSSNQPPPDQSSNINHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12304360 12306396 + CcPI632755_09g012160.1 Cco09g1216 187673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1216 678 Gene3D - 493 571 IPR036638 GO:0046983(InterPro)
Cco09g1216 678 Pfam Helix-loop-helix DNA-binding domain 498 544 IPR011598 GO:0046983(InterPro)
Cco09g1216 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 494 543 IPR011598 GO:0046983(InterPro)
Cco09g1216 678 FunFam Transcription factor bHLH13 487 561 - -
Cco09g1216 678 SMART finulus 500 549 IPR011598 GO:0046983(InterPro)
Cco09g1216 678 MobiDBLite consensus disorder prediction 390 432 - -
Cco09g1216 678 CDD bHLH_AtAIB_like 491 566 - -
Cco09g1216 678 MobiDBLite consensus disorder prediction 295 355 - -
Cco09g1216 678 Pfam Plant bHLH transcription factor, ACT-like domain 600 656 IPR054502 -
Cco09g1216 678 PANTHER MYC 66 673 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cco09g1216 678 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 497 567 IPR036638 GO:0046983(InterPro)
Cco09g1216 678 MobiDBLite consensus disorder prediction 471 504 - -
Cco09g1216 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 74 254 IPR025610 -
Cco09g1216 678 Coils Coil 540 574 - -
Cco09g1216 678 MobiDBLite consensus disorder prediction 390 411 - -
Cco09g1216 678 MobiDBLite consensus disorder prediction 570 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0081 Cco-Chr7:822859 Cco09g1216 Cco-Chr9:12304360 4.00E-38 dispersed
Cco09g1216 Cco-Chr9:12304360 Cco10g0087 Cco-Chr10:768670 5.90E-32 dispersed
Cco11g0196 Cco-Chr11:1896672 Cco09g1216 Cco-Chr9:12304360 3.20E-06 dispersed
Cco06g0378 Cco-Chr6:4217956 Cco09g1216 Cco-Chr9:12304360 1.30E-23 transposed
Cco06g0877 Cco-Chr6:10827372 Cco09g1216 Cco-Chr9:12304360 3.40E-08 transposed
Cco10g0168 Cco-Chr10:1645807 Cco09g1216 Cco-Chr9:12304360 8.90E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59968 PF14215 bHLH-MYC_N 1.40E-54 CL0161 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1216 K13422 - csv:101218165 1152.5