Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1216 | ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTGCGCCGCCACAGCCTCAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTATGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCATCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTCTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACGATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCTAAATCTAGTGTTGTAATTGAAACTCCAAGCTCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGCCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAACTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCGGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCGGGTGTTTGCGCTGGCGATTCTGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACATAAACCATAGTGATATCGAAACCGATATCGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCCGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG | 2037 | 47.03 | MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVAPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAIDEVVTDTEWFYLVSMTQSFASGVGLPGQAFLDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNDLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPTPSTTNSQPISKITTETIENPKSSVVIETPSSVVPPPSQKTHRQPQPIQTQSFFTNRELNFSELGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGVCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSSNKDSCISSSNQPPPDQSSNINHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR | 678 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 12304360 | 12306396 | + | CcPI632755_09g012160.1 | Cco09g1216 | 187673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1216 | 678 | Gene3D | - | 493 | 571 | IPR036638 | GO:0046983(InterPro) | |
Cco09g1216 | 678 | Pfam | Helix-loop-helix DNA-binding domain | 498 | 544 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1216 | 678 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 494 | 543 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1216 | 678 | FunFam | Transcription factor bHLH13 | 487 | 561 | - | - | |
Cco09g1216 | 678 | SMART | finulus | 500 | 549 | IPR011598 | GO:0046983(InterPro) | |
Cco09g1216 | 678 | MobiDBLite | consensus disorder prediction | 390 | 432 | - | - | |
Cco09g1216 | 678 | CDD | bHLH_AtAIB_like | 491 | 566 | - | - | |
Cco09g1216 | 678 | MobiDBLite | consensus disorder prediction | 295 | 355 | - | - | |
Cco09g1216 | 678 | Pfam | Plant bHLH transcription factor, ACT-like domain | 600 | 656 | IPR054502 | - | |
Cco09g1216 | 678 | PANTHER | MYC | 66 | 673 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Cco09g1216 | 678 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 497 | 567 | IPR036638 | GO:0046983(InterPro) | |
Cco09g1216 | 678 | MobiDBLite | consensus disorder prediction | 471 | 504 | - | - | |
Cco09g1216 | 678 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 74 | 254 | IPR025610 | - | |
Cco09g1216 | 678 | Coils | Coil | 540 | 574 | - | - | |
Cco09g1216 | 678 | MobiDBLite | consensus disorder prediction | 390 | 411 | - | - | |
Cco09g1216 | 678 | MobiDBLite | consensus disorder prediction | 570 | 594 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0081 | Cco-Chr7:822859 | Cco09g1216 | Cco-Chr9:12304360 | 4.00E-38 | dispersed | |
Cco09g1216 | Cco-Chr9:12304360 | Cco10g0087 | Cco-Chr10:768670 | 5.90E-32 | dispersed | |
Cco11g0196 | Cco-Chr11:1896672 | Cco09g1216 | Cco-Chr9:12304360 | 3.20E-06 | dispersed | |
Cco06g0378 | Cco-Chr6:4217956 | Cco09g1216 | Cco-Chr9:12304360 | 1.30E-23 | transposed | |
Cco06g0877 | Cco-Chr6:10827372 | Cco09g1216 | Cco-Chr9:12304360 | 3.40E-08 | transposed | |
Cco10g0168 | Cco-Chr10:1645807 | Cco09g1216 | Cco-Chr9:12304360 | 8.90E-211 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59968 | PF14215 | bHLH-MYC_N | 1.40E-54 | CL0161 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1216 | K13422 | - | csv:101218165 | 1152.5 |