Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1233 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGACGATGAATCCCATCCTCCGTCAGAATTCGTCACCGCCGCAGACTCTACCGCCCCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCATATGAGAGATTGCCACTAGAAGAACAAGAGCCAGAACAAGAGCAAGAGCAAGATCAACTCCAGATGCAGCCACCGCCGTCGCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 816 51.35 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEPEQEQEQDQLQMQPPPSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12556308 12557123 - CcPI632755_09g012330.1 Cco09g1233 187690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1233 271 CDD DUF296 92 175 IPR005175 -
Cco09g1233 271 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Cco09g1233 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680(InterPro)
Cco09g1233 271 MobiDBLite consensus disorder prediction 215 258 - -
Cco09g1233 271 MobiDBLite consensus disorder prediction 22 81 - -
Cco09g1233 271 Gene3D - 91 225 - -
Cco09g1233 271 MobiDBLite consensus disorder prediction 31 45 - -
Cco09g1233 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Cco09g1233 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Cco09g1233 271 FunFam AT-hook motif nuclear-localized protein 91 219 - -
Cco09g1233 271 MobiDBLite consensus disorder prediction 223 258 - -
Cco09g1233 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 263 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0307 Cco-Chr5:2457360 Cco09g1233 Cco-Chr9:12556308 2.20E-80 dispersed
Cco06g0033 Cco-Chr6:328259 Cco09g1233 Cco-Chr9:12556308 2.70E-60 dispersed
Cco07g0348 Cco-Chr7:3666747 Cco09g1233 Cco-Chr9:12556308 1.90E-58 dispersed
Cco08g1328 Cco-Chr8:25156404 Cco09g1233 Cco-Chr9:12556308 1.70E-44 dispersed
Cco09g1233 Cco-Chr9:12556308 Cco11g0685 Cco-Chr11:7455160 1.10E-50 dispersed
Cco10g0179 Cco-Chr10:1738579 Cco09g1233 Cco-Chr9:12556308 3.70E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1233 - - - 0.0