Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1245 GAATTTGATCCATTCTCATTGAGTATTGATGGGGATAAACTAAGAGGTCGTGGGACTACAGATTGTTTGGGACATGTTGCTCTTTTAACTGAACTCTTGAAGAAAATTGCACAAACTAAACCACCATTGAAGTCTTCTGTTGTTGTTATATTCATTGCCTCTGAAGAGAACAATTCAATCCAAGGAATTGGAGTTGAACAACTTTGGGCAGATGGATACTTTGATAATTTAAAAGGAGGCCCTCTATATTGGATTGATACAGCAGATTCACAACCTTGCATTGGTACTGGAGGTTCTTTAACTTGGTCCATTAAAACTACTGGAAAGCTTTTCCATAGTGGTATGCCAGATAAGGCTATTAATGCCTTGGAACTAGCAATGGATGCTCTCAAACCAATCCAATTAAGCTTTTATAAAGATTTTCCTGCTGATCCTAAGGAAGCAGACTATAAATTTACAATACCATCAACCATGAAACCAACCCAATGGAATTACCCAGGAGGTGGTATTAATCAAATTCCAGGAGAATCTACCATTGCAGGAGATGTAAGGTTAACTCCCTTCTACGAAATGGATGATGTTAAGACAAAAATCCAAGGGTATGTTGATGACATTAATGCACACGTGGAGAATCTTGAATCAAGGGGCCCTGTTTCAAAGTATACCCTACCAGATGAAGGGTTAAGGGGAAGAATTGATATAAGTTTTGGTGTGCCATTGCCTGGAATTGCATGTGATCTTAATTCCATTGGCTATAAAGTTTTATACAATGCAACAGAGAAAGTTATAGGGTATGTCAAACCTTACTCACTAACAGGGAGTTTGCCACTTGTTTATGACCTTCAGGAGGGCTATGACGTTCAGAACGTTGGCTATGGCTTAACTGATACCTACCATGCAGATAATGAGTATTGTCTTTATAGTGATATGAGCAATGGCTACAAGTCTCTTAGTTTTTCCCACTTTTCCCCGCCCCCGTTCTCTTCTGCTCCTTATTACTTTGGGACACGATCCGCTGGATCAGACATGCCGGTGGCTGCATCGGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCCTTCCGAACACATATAATGCAGACAAAAGAACTTGGCACCTGTCCTGTGCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTATGAGCTCTTGGATGAAATAATGGATTTTGGTTACCCACAAAACCTCTCTCCTGAAATTCTAAAACTATATATCACTCAGGAAGGAGTTCGCTCGCCATTCTCATCCAAGCCTTCAGATAAACCTGTCCCAAATGCAACTTTACAAGTTACGGGTGCTGTTGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAGAATGAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTCTGCGTTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGCATGCCTGATTTAAAGTTGGGTTTAAACGATAAGATTGGCCTTGAGAAAGAGTCACAGTTGAAGTCCCGTCCAGCTAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTGCCGCCGGATGGGGAATTTGAATTGATGAAATACCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTTCTCCCAACAATTAAGGAACTTGGTAGGACACATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCTGTTCCAAAACAGACAGCTAAAACTAGTTTTCAAGTGACATCAGGTCGAGCCAAGTACAACGCCTCAATCGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAGTCGAGCTGATTTCTACAATGACCGAAAGGAAGCCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGAGTCCGTTTCCTTAAGGTGTGGGAGAAAAGTGGTTACAACACCGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCATACGAGATCCGGTTGGTTGTTCTTATCAATGTTCACGATAGTCTTGAGAGTCTCACTAATCATTCAGTCACTTCAGCTCAACCTGCTATCGATCAGTCTCAGGCATATCTCAACCCATATACTAGCTTAGTACTCTACTTGATCAATATGGATCAATCTACAAGAACGATTCCAAAGGAAGAATGCTCCAAGTATTTTTCAACTCAAGCGTTCTCTTGCTACCTTGGCTTGGAATCAAAACTCAGAATTCAAGAAATGGTTGATTATTTTCAAACAGAATATCTTATGGATTTTCTGATGGGACTCAATGAGTCTTTTTCTCGTGCTCGTGCTCAGTTGCTTCTCATAGATTTGATTCCAACATCAAATGATTCTCCTAACTCTGCTGCTGGAATCTCTACCAGCACAGCTGATGCACTGTTACAATGTCAAACCATATTGAATCAACTACAATCGCAGCTCTCTGTTTCTTCAAACACTTATACCACGCATGTTGCAGGTATTCATCCTAATTCTTGTTGGATTATTGACTCTGGCACATCTGCTCATGTTTGTTGTTCAAAGGTGTTTACTTCCATGATACCTTACTCTTCTACAATTAGTTTACCTGATAAATAG 2943 40.43 EFDPFSLSIDGDKLRGRGTTDCLGHVALLTELLKKIAQTKPPLKSSVVVIFIASEENNSIQGIGVEQLWADGYFDNLKGGPLYWIDTADSQPCIGTGGSLTWSIKTTGKLFHSGMPDKAINALELAMDALKPIQLSFYKDFPADPKEADYKFTIPSTMKPTQWNYPGGGINQIPGESTIAGDVRLTPFYEMDDVKTKIQGYVDDINAHVENLESRGPVSKYTLPDEGLRGRIDISFGVPLPGIACDLNSIGYKVLYNATEKVIGYVKPYSLTGSLPLVYDLQEGYDVQNVGYGLTDTYHADNEYCLYSDMSNGYKSLSFSHFSPPPFSSAPYYFGTRSAGSDMPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTMTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRLVVLINVHDSLESLTNHSVTSAQPAIDQSQAYLNPYTSLVLYLINMDQSTRTIPKEECSKYFSTQAFSCYLGLESKLRIQEMVDYFQTEYLMDFLMGLNESFSRARAQLLLIDLIPTSNDSPNSAAGISTSTADALLQCQTILNQLQSQLSVSSNTYTTHVAGIHPNSCWIIDSGTSAHVCCSKVFTSMIPYSSTISLPDK 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12960028 12981291 + CcPI632755_09g012450.1 Cco09g1245 187702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1245 980 Gene3D - 347 487 - -
Cco09g1245 980 Gene3D Mu homology domain, subdomain B 517 775 - -
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 699 710 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 659 674 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 510 538 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 590 617 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 357 377 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PRINTS Clathrin coat assembly protein signature 444 471 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 PANTHER AP COMPLEX SUBUNIT MU 347 779 IPR050431 GO:0006897(PANTHER)|GO:0016192(PANTHER)|GO:0031410(PANTHER)
Cco09g1245 980 CDD AP-2_Mu2_Cterm 517 779 IPR043512 -
Cco09g1245 980 CDD AP2_Mu_N 348 486 IPR043532 -
Cco09g1245 980 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 508 779 IPR036168 -
Cco09g1245 980 Pfam Peptidase family M20/M25/M40 4 317 IPR002933 GO:0016787(InterPro)
Cco09g1245 980 Gene3D - 98 213 - -
Cco09g1245 980 SUPERFAMILY SNARE-like 348 484 IPR011012 -
Cco09g1245 980 Pfam Adaptor complexes medium subunit family 509 780 IPR028565 -
Cco09g1245 980 SUPERFAMILY Zn-dependent exopeptidases 2 316 - -
Cco09g1245 980 FunFam AP-2 complex subunit mu, putative 346 486 - -
Cco09g1245 980 SUPERFAMILY Bacterial exopeptidase dimerisation domain 98 208 IPR036264 -
Cco09g1245 980 Pfam Peptidase dimerisation domain 94 207 IPR011650 -
Cco09g1245 980 Gene3D Zn peptidases 1 82 - -
Cco09g1245 980 ProSiteProfiles Mu homology domain (MHD) profile. 519 779 IPR028565 -
Cco09g1245 980 Gene3D Mu homology domain, subdomain B 632 779 - -
Cco09g1245 980 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 508 528 IPR018240 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cco09g1245 980 FunFam AP-2 complex subunit mu 632 742 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1245 K11826 - - csv:101220779 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2830 Cco-Chr5:35966651 Cco09g1245 Cco-Chr9:12960028 2.90E-93 dispersed
Cco09g1242 Cco-Chr9:12841906 Cco09g1245 Cco-Chr9:12960028 6.40E-141 dispersed
Cco09g1243 Cco-Chr9:12901025 Cco09g1245 Cco-Chr9:12960028 1.30E-163 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42