Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g1278 | ATGGCCTGCAGAGGGTGCTTTGAGTGCCTATTGAAGCTTCTGAACTTCTTCCTATCCCTGCTGGGTCTTGCCATGGTGGGCTATGGGATTTACTTGTTGGTTGAGTACTTGCAATCTCCTAGTGATGTCCCAGGACCTTCGTCGAGTGGTGATCATGATCTGGTCCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAATATCTTTGATAACCTTCCAAAAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGTCATTATCTTTGTTGTCTCTTGTTTTGGGTGTATTGGAGCAGCAACACGTAATGGATGCTGTTTAAGTTGTTATTCAGTTTTGCTGCTTCTACTGATTTTGGTGCAACTAGGATGTGCTGCCTTCATATTCTTTGACAAAACTTGGAGAGATGAAATTCCTGGGGACAAAACAGGAAACTTTGATAAGATCTATGAACTCCTTGAAGACAAGTGGGAAATCATCAGATGGGTTGCATTAGGAGCTGTAATTTTTGAGGCTCTCCTTTTCTTGTTGGCTCTTGTGGTTCGTGCAGCAAACAGACCTGCAGACTATGACAGCGATGATGAGTACATTGCTCCAAGGCAACAAATCAGACAACCATTGATCAATAGGCCTGCTGCTCCTGCAACAGGTGTGCCTGTGGCTGGGACACTTGATCAACGACCAAGTCGAAATGATGCTTGGAGTACACGAATGAGGGAAAAGTATGGGCTGGATACTTCAGAGTTCACATACAACCCATCTGAGTCTCACAGGTTTCAGCAAGTTGCCCCTCAGCCAGCCGAAGAAAAGAGCCGCTGCACCATCATTGTTTTAGCGGGTCCAAATGCTTGTGTCCGCTTGTATCCGCTTGTGTATAACCAGAGGTTTTTCCGGAGGCTGTACTTGTTTTTGCATAGAATTGAAACTTTAGGCGATGGACTTTTGGTTTTTGACTATTACAAAGAAACATGCCCTTTTGTCGAAGATATTATTCGACGACAAGTTGAGATAGCTGTGCTCAAGGATCCTCGAATGGCTGCTTCACTCCTTCGCTTGCATTTTCATGATTGTTTTGTTATGGGATGTGATGCATCAGTTCTTCTAGACAGTAATGACAAGATGGTGAGCGAAAAGCAAGCAGCTCCAAATTTAAACTCTCTTCGCGGTTTCAATGTTATCGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACACTGTGTCTTGTGCTGATATTTTGACCATTGCCGCTCGTGATGCTGTTGTGCTCAGAGGAGGCCCTGGATGGCCAGTGTTATTGGGAAGGAAAGACTCCTTGGAAGCAAGCTTTGATGGAGCCAACAAATACATTCCTTCTCCCAATTCCTCCCTTGAGACCCTAATTGCCAATTTTCAAGAACAAGGTCTTAATGTTGGAGACTTGGTTGCTCTATCTGGAAGCCACACCATAGGGAAAGCAAGATGCTTGAGCTTTAGGCAAAGAGTATACCAAATGAATCCAGAAGAAGAATATGACAGATACAAGAGATACAACACATACAGAAGAATTTTAAGGTCAATCTGCCCTAAAACAGGGCAGGATCAAAGGGTAGCACCCCTAGATTTTAGGACACCTTCAAGATTTGACAATCACTATTTCCTCAACATTCTTGAAGGTAAAGGGCTTTTGGGGTCTGACAATGTGCTCATAAATCAAGACCATGATGGTGCAATCACAAGACAAGTTTGGAGTTATGCCTCTGACCAAACCCTTTTCTTTGATTCCTTTGTTAAGTCCATTGTCAAGATGGGCAACATCAATGTCCTCACTTCCCATCAAGGTGAAGTCAGAAGGAATTGTAGGTTTACCAATCATTAG | 1869 | 43.5 | MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSPSDVPGPSSSGDHDLVQLGRPMLMAVSLSSNIFDNLPKAWFIYLFIAVGVIIFVVSCFGCIGAATRNGCCLSCYSVLLLLLILVQLGCAAFIFFDKTWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFLLALVVRAANRPADYDSDDEYIAPRQQIRQPLINRPAAPATGVPVAGTLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIIVLAGPNACVRLYPLVYNQRFFRRLYLFLHRIETLGDGLLVFDYYKETCPFVEDIIRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDSNDKMVSEKQAAPNLNSLRGFNVIDEIKYILEEACPYTVSCADILTIAARDAVVLRGGPGWPVLLGRKDSLEASFDGANKYIPSPNSSLETLIANFQEQGLNVGDLVALSGSHTIGKARCLSFRQRVYQMNPEEEYDRYKRYNTYRRILRSICPKTGQDQRVAPLDFRTPSRFDNHYFLNILEGKGLLGSDNVLINQDHDGAITRQVWSYASDQTLFFDSFVKSIVKMGNINVLTSHQGEVRRNCRFTNH | 622 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 13885720 | 13895224 | - | CcPI632755_09g012780.1 | Cco09g1278 | 187735 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g1278 | 622 | CDD | secretory_peroxidase | 318 | 620 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Cco09g1278 | 622 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 477 | 487 | IPR019793 | - | |
| Cco09g1278 | 622 | PANTHER | PEROXIDASE 72-RELATED | 307 | 619 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | Gene3D | - | 322 | 621 | - | - | |
| Cco09g1278 | 622 | ProSiteProfiles | Plant heme peroxidase family profile. | 317 | 621 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | Gene3D | Peroxidase, domain 2 | 455 | 601 | - | - | |
| Cco09g1278 | 622 | ProSitePatterns | Peroxidases active site signature. | 349 | 360 | IPR019794 | GO:0004601(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 476 | 488 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 327 | 346 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 552 | 569 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 429 | 444 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 595 | 608 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 536 | 551 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 410 | 420 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 351 | 371 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Plant peroxidase signature | 391 | 404 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | Pfam | Tetraspanin family | 8 | 137 | IPR018499 | GO:0016020(InterPro) | |
| Cco09g1278 | 622 | FunFam | Peroxidase | 455 | 600 | - | - | |
| Cco09g1278 | 622 | Pfam | Peroxidase | 335 | 578 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | FunFam | Peroxidase | 321 | 465 | - | - | |
| Cco09g1278 | 622 | PRINTS | Haem peroxidase superfamily signature | 349 | 363 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Haem peroxidase superfamily signature | 477 | 492 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Haem peroxidase superfamily signature | 538 | 553 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Haem peroxidase superfamily signature | 429 | 441 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | PRINTS | Haem peroxidase superfamily signature | 411 | 428 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco09g1278 | 622 | SUPERFAMILY | Heme-dependent peroxidases | 319 | 621 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2597 | Cco-Chr5:34229134 | Cco09g1278 | Cco-Chr9:13885720 | 2.70E-76 | dispersed | |
| Cco06g0445 | Cco-Chr6:4898251 | Cco09g1278 | Cco-Chr9:13885720 | 3.40E-77 | dispersed | |
| Cco09g1278 | Cco-Chr9:13885720 | Cco11g0594 | Cco-Chr11:6349590 | 3.00E-75 | dispersed | |
| Cco09g1278 | Cco-Chr9:13885720 | Cco07g0944 | Cco-Chr7:21624347 | 6.20E-89 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g1278 | K00430 | - | csv:101207771 | 553.132 |