Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1278 ATGGCCTGCAGAGGGTGCTTTGAGTGCCTATTGAAGCTTCTGAACTTCTTCCTATCCCTGCTGGGTCTTGCCATGGTGGGCTATGGGATTTACTTGTTGGTTGAGTACTTGCAATCTCCTAGTGATGTCCCAGGACCTTCGTCGAGTGGTGATCATGATCTGGTCCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAATATCTTTGATAACCTTCCAAAAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGTCATTATCTTTGTTGTCTCTTGTTTTGGGTGTATTGGAGCAGCAACACGTAATGGATGCTGTTTAAGTTGTTATTCAGTTTTGCTGCTTCTACTGATTTTGGTGCAACTAGGATGTGCTGCCTTCATATTCTTTGACAAAACTTGGAGAGATGAAATTCCTGGGGACAAAACAGGAAACTTTGATAAGATCTATGAACTCCTTGAAGACAAGTGGGAAATCATCAGATGGGTTGCATTAGGAGCTGTAATTTTTGAGGCTCTCCTTTTCTTGTTGGCTCTTGTGGTTCGTGCAGCAAACAGACCTGCAGACTATGACAGCGATGATGAGTACATTGCTCCAAGGCAACAAATCAGACAACCATTGATCAATAGGCCTGCTGCTCCTGCAACAGGTGTGCCTGTGGCTGGGACACTTGATCAACGACCAAGTCGAAATGATGCTTGGAGTACACGAATGAGGGAAAAGTATGGGCTGGATACTTCAGAGTTCACATACAACCCATCTGAGTCTCACAGGTTTCAGCAAGTTGCCCCTCAGCCAGCCGAAGAAAAGAGCCGCTGCACCATCATTGTTTTAGCGGGTCCAAATGCTTGTGTCCGCTTGTATCCGCTTGTGTATAACCAGAGGTTTTTCCGGAGGCTGTACTTGTTTTTGCATAGAATTGAAACTTTAGGCGATGGACTTTTGGTTTTTGACTATTACAAAGAAACATGCCCTTTTGTCGAAGATATTATTCGACGACAAGTTGAGATAGCTGTGCTCAAGGATCCTCGAATGGCTGCTTCACTCCTTCGCTTGCATTTTCATGATTGTTTTGTTATGGGATGTGATGCATCAGTTCTTCTAGACAGTAATGACAAGATGGTGAGCGAAAAGCAAGCAGCTCCAAATTTAAACTCTCTTCGCGGTTTCAATGTTATCGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACACTGTGTCTTGTGCTGATATTTTGACCATTGCCGCTCGTGATGCTGTTGTGCTCAGAGGAGGCCCTGGATGGCCAGTGTTATTGGGAAGGAAAGACTCCTTGGAAGCAAGCTTTGATGGAGCCAACAAATACATTCCTTCTCCCAATTCCTCCCTTGAGACCCTAATTGCCAATTTTCAAGAACAAGGTCTTAATGTTGGAGACTTGGTTGCTCTATCTGGAAGCCACACCATAGGGAAAGCAAGATGCTTGAGCTTTAGGCAAAGAGTATACCAAATGAATCCAGAAGAAGAATATGACAGATACAAGAGATACAACACATACAGAAGAATTTTAAGGTCAATCTGCCCTAAAACAGGGCAGGATCAAAGGGTAGCACCCCTAGATTTTAGGACACCTTCAAGATTTGACAATCACTATTTCCTCAACATTCTTGAAGGTAAAGGGCTTTTGGGGTCTGACAATGTGCTCATAAATCAAGACCATGATGGTGCAATCACAAGACAAGTTTGGAGTTATGCCTCTGACCAAACCCTTTTCTTTGATTCCTTTGTTAAGTCCATTGTCAAGATGGGCAACATCAATGTCCTCACTTCCCATCAAGGTGAAGTCAGAAGGAATTGTAGGTTTACCAATCATTAG 1869 43.5 MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSPSDVPGPSSSGDHDLVQLGRPMLMAVSLSSNIFDNLPKAWFIYLFIAVGVIIFVVSCFGCIGAATRNGCCLSCYSVLLLLLILVQLGCAAFIFFDKTWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFLLALVVRAANRPADYDSDDEYIAPRQQIRQPLINRPAAPATGVPVAGTLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIIVLAGPNACVRLYPLVYNQRFFRRLYLFLHRIETLGDGLLVFDYYKETCPFVEDIIRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDSNDKMVSEKQAAPNLNSLRGFNVIDEIKYILEEACPYTVSCADILTIAARDAVVLRGGPGWPVLLGRKDSLEASFDGANKYIPSPNSSLETLIANFQEQGLNVGDLVALSGSHTIGKARCLSFRQRVYQMNPEEEYDRYKRYNTYRRILRSICPKTGQDQRVAPLDFRTPSRFDNHYFLNILEGKGLLGSDNVLINQDHDGAITRQVWSYASDQTLFFDSFVKSIVKMGNINVLTSHQGEVRRNCRFTNH 622
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 13885720 13895224 - CcPI632755_09g012780.1 Cco09g1278 187735
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1278 622 CDD secretory_peroxidase 318 620 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco09g1278 622 ProSitePatterns Peroxidases proximal heme-ligand signature. 477 487 IPR019793 -
Cco09g1278 622 PANTHER PEROXIDASE 72-RELATED 307 619 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 Gene3D - 322 621 - -
Cco09g1278 622 ProSiteProfiles Plant heme peroxidase family profile. 317 621 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 Gene3D Peroxidase, domain 2 455 601 - -
Cco09g1278 622 ProSitePatterns Peroxidases active site signature. 349 360 IPR019794 GO:0004601(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 476 488 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 327 346 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 552 569 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 429 444 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 595 608 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 536 551 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 410 420 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 351 371 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Plant peroxidase signature 391 404 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 Pfam Tetraspanin family 8 137 IPR018499 GO:0016020(InterPro)
Cco09g1278 622 FunFam Peroxidase 455 600 - -
Cco09g1278 622 Pfam Peroxidase 335 578 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 FunFam Peroxidase 321 465 - -
Cco09g1278 622 PRINTS Haem peroxidase superfamily signature 349 363 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Haem peroxidase superfamily signature 477 492 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Haem peroxidase superfamily signature 538 553 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Haem peroxidase superfamily signature 429 441 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 PRINTS Haem peroxidase superfamily signature 411 428 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1278 622 SUPERFAMILY Heme-dependent peroxidases 319 621 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2597 Cco-Chr5:34229134 Cco09g1278 Cco-Chr9:13885720 2.70E-76 dispersed
Cco06g0445 Cco-Chr6:4898251 Cco09g1278 Cco-Chr9:13885720 3.40E-77 dispersed
Cco09g1278 Cco-Chr9:13885720 Cco11g0594 Cco-Chr11:6349590 3.00E-75 dispersed
Cco09g1278 Cco-Chr9:13885720 Cco07g0944 Cco-Chr7:21624347 6.20E-89 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1278 K00430 - csv:101207771 553.132