Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1287 ATGGCTTCCATGGAGACCTTGATCGGCCTCGTTAACCGTATACAAAGGGCTTGTACTGTACTTGGTGATTATGGCGGTGATTCTGCCTTGCCTACTCTTTGGGAGGCTCTTCCATCTGTTGTTGTCGTCGGCGGTCAGAGCTCTGGAAAATCATCGGTGTTGGAGAGCATCGTTGGTCGTGATTTTCTTCCCAGGGGATCAGGAATTGTTACACGGAGGCCTCTGGTTCTGCAGCTTCAGAAGACAGAACCAGGAAGAGAGGAGTATGCAGAATTTCTTCATCTGCCTAAGAAAAAATTCTCTGATTTCTCAATGATTAGGAAGGAAATAGAAAATGAAACTGATAGCTTGACTGGGAGGTTAAAACAGATTTCTCCTGTTCCAATTCATCTCAGTATCTACTCTCCAAATGTGGTCAATTTGACACTCATTGATTTGCCTGGTTTAACAAAGGTTGCTGTAGAAGGACAGCCTGAGAGTATTGTACAAGATATTGAGACAATGGTCCGTACTTATGTCGAGAAGCCAAACTGCATTATTTTGGCCATAACTCCAGCTAACCAAGATATTGCAACATCTGATGCTATTAAGCTTTCTCGAGAGGTTGATCCCACAGGTGAAAGGACATTTGGGGTGCTGACAAAGCTTGATTTGATGGATAAGGGAACAAACGCTTTAGAAGTTCTTGATGGAAGGTCCTACCGGCTTCAACACCCTTGGGTTGGAGTTGTCAACCGTTCTCAAGCTGATATCAATAAGAATATTGATATGATTACCGCTCGGCGAAGGGAACGTGAATTCTTTGCTTCTAGTGTTGACTACAGACACTTGGCTGGAACAATGGGGTCAGAGAATCTAGCAAAACTCCTCTCAAAGCACCTAGAGTCTCTGATAAAAACACGTATGCCTGGGATTGCATCATTAATTGACAAAAGCATTGATGAAATTGAAGCGGAGCTTAATCAGCTTGGGAAGCCTGTTGCAATTGATTCTGGGGCTCAGTTATATACTATCCTAGAGCTTTGCCGTGCATTTGACCTAGTGTTTAAGGAGCATCTCCATGGGGGGAGACCTGGTGGTGATCGGATATATAATGTTTTTGATAATCAGCTCCCTCATGCTTTGAGAAGGCTTCCCTTTGATCGCTATCTCTCACTGCAAAATGTGAGGAAAGTGATATCGGAGGCCGATGGATACCAACCTCATCTGATCGCACCTGAACATGGGTATCGGCGCCTTATTGAAGGTGCAGTTAATTATTTTAGAGGTCCGGCTGAAGCTTCAGTTGATGCTGTTCATTCCATTTTGAAGGAACTCGTTAGAAGAGCAATGGCAGAAACTCAGGAGCTGAAGCGCTTCCCCACTCTCCAAGCTGAAATTTCAAGAGCTGCAAATGAAGCATTAGAGAGATTTCGAGAAGATAGCAAAAAGACAACCTTGCGATTGGTTGACATGGAATCCTCCTACCTAACAGTAGACTTCTTTCGAAAGCTCCCAGAGGAAGATGAAAAGGGAGGAACCCCACCAGCTGCAGCTTCCACAGATAGGTATACCGAGGCGCATTTTCACCGGATAGCATCAAATATTTCCTCTTATATCAGGATGGTATCTGAGACACTGAGGAACACTATTCCAAAGTCTGTTGTTCATTGTCAAGTTAGGGAAGCAAAGCGATCTATATTAGATTACTTTTATGTGCAATTGGGACAAATGGAGGGTAATCAACTTGCAGCTCTTCTGGATGAAGATCCTGCATTGGTTGAATCGAGACAGCAGTGTGCCAAAAGGCTCGAACTACATAAATCTGCAAGGGATGAGATCGACTCGGTCTCATGGTTCTGA 1842 44.08 MASMETLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVVVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLQKTEPGREEYAEFLHLPKKKFSDFSMIRKEIENETDSLTGRLKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQDIETMVRTYVEKPNCIILAITPANQDIATSDAIKLSREVDPTGERTFGVLTKLDLMDKGTNALEVLDGRSYRLQHPWVGVVNRSQADINKNIDMITARRREREFFASSVDYRHLAGTMGSENLAKLLSKHLESLIKTRMPGIASLIDKSIDEIEAELNQLGKPVAIDSGAQLYTILELCRAFDLVFKEHLHGGRPGGDRIYNVFDNQLPHALRRLPFDRYLSLQNVRKVISEADGYQPHLIAPEHGYRRLIEGAVNYFRGPAEASVDAVHSILKELVRRAMAETQELKRFPTLQAEISRAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLPEEDEKGGTPPAAASTDRYTEAHFHRIASNISSYIRMVSETLRNTIPKSVVHCQVREAKRSILDYFYVQLGQMEGNQLAALLDEDPALVESRQQCAKRLELHKSARDEIDSVSWF 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14106067 14112939 - CcPI632755_09g012870.1 Cco09g1287 187744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1287 613 Pfam Dynamin central region 224 492 IPR000375 -
Cco09g1287 613 ProSiteProfiles GED domain profile. 522 613 IPR020850 -
Cco09g1287 613 PRINTS Dynamin signature 227 246 IPR022812 -
Cco09g1287 613 PRINTS Dynamin signature 37 55 IPR022812 -
Cco09g1287 613 PRINTS Dynamin signature 185 203 IPR022812 -
Cco09g1287 613 PRINTS Dynamin signature 204 220 IPR022812 -
Cco09g1287 613 PRINTS Dynamin signature 135 152 IPR022812 -
Cco09g1287 613 PRINTS Dynamin signature 62 79 IPR022812 -
Cco09g1287 613 FunFam Dynamin-related protein 1C 334 590 - -
Cco09g1287 613 SMART GED_2 517 610 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1287 613 Gene3D - 4 340 IPR027417 -
Cco09g1287 613 PANTHER DYNAMIN 5 610 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cco09g1287 613 Pfam Dynamin GTPase effector domain 518 610 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1287 613 Gene3D Dynamin, middle domain 341 590 - -
Cco09g1287 613 CDD DLP_1 37 303 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1287 613 SMART dynamin_3 4 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g1287 613 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Cco09g1287 613 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525(InterPro)
Cco09g1287 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 311 IPR027417 -
Cco09g1287 613 FunFam dynamin-related protein 1E 4 312 - -
Cco09g1287 613 Pfam Dynamin family 40 216 IPR045063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1287 K27686 - - csv:101208260 1136.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0689 Cco-Chr1:7165057 Cco09g1287 Cco-Chr9:14106067 1.80E-274 dispersed
Cco07g1235 Cco-Chr7:26229918 Cco09g1287 Cco-Chr9:14106067 8.10E-254 dispersed
Cco09g1287 Cco-Chr9:14106067 Cco10g0942 Cco-Chr10:20561155 2.50E-82 dispersed
Cco03g0715 Cco-Chr3:7356832 Cco09g1287 Cco-Chr9:14106067 6.10E-37 transposed
Cco11g0946 Cco-Chr11:14662871 Cco09g1287 Cco-Chr9:14106067 1.80E-33 transposed
Cco11g1853 Cco-Chr11:31220418 Cco09g1287 Cco-Chr9:14106067 3.50E-22 transposed
Cco05g0332 Cco-Chr5:2680937 Cco09g1287 Cco-Chr9:14106067 8.50E-288 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154