Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1316 ATGGTGGACTATAGTTTGCCGGTATCGAAGAGAACCAGGCTGAGGCGAGCAATGGCCGGAATGGAGGATTTGGAGCAGAGGAAGAAGAGGAGGAAGAAGAGCAGGACGGATTCCTCCAGTGACAATGTTCGAGGTCAGGCTTCGAGCGGTAAGAGGGTTAATGATTTTGAACATTCTAGTGTTAATCGTACAATGGAGGTGAATCCTGTTCGTTTATATGATGATAGTGAGGGAGATAGTTTAGAGGAGATTGATGCGGTAGCATTTGGTAGAGAAGGTGCGGATTCGGTCACATTTGTAGATTCTGAGAGTTCGGGGCTAAAGAATGTGAAAAAATGTAGTACGAAGGGGTTTCAGAAAGGGAATATTGATTTAATTGATTTAGAACATGAAGTGATTTTGTCAGATGATGAGGAGGGTTTTGGTTTTGATTCTGTAAATTCCATGTGTTCAATTTCTAGGTCTGCTACTGCTGCTGCCTCCAAGGATGGGGGTTTTGTTAGCTTTGATTTGGACAATGAGGACGATAGTAGTGGCTTGCTCTCTTCTGGCAAGGGTAAAGATACTTTTGAGATATCTCCTGATAAAAGCACTGGGGGAAGTGATTGCTTGAACTCTAATGGTTGCGAGAGTGGTGGTTGCTCATACAAGACTGAGCCCACGTGTAGTTCTGATGAAGCTGTAGATGATTCCACTGAATTGGGAGCATCATCAAGTGAAGAGGAGTTTGATGACTCCAGTGATAGAAATTACGAATTAGAAGAATCAGACGGGGCAATTTCAGAGTCCTCTAGTTCAGAAGATGGGAAAAGTAATGGAAGTTACTGTGCAGAAGTAAGAAATAAAAGGGAGAGGAAGGAAAGAAGGAAGGGTGGAAATTTGATTGAAGGTGGGCTAAGGAGGAGGAAAGCGTATGGCTTAGACATATTGGTTGATTTTGACAAGGACGGAAATAACAAAAATGTTAAGGTTGGTGAACAAGTTAACTGTATTGCACGAAGAACTCGTTCACGCTTTGGTTTTAGGGTCAGGAAAATAAATACTGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGATGAGGAAGGGTCAGAGTTTCAGTGTGATGAGAAAGAATTAGATTCTTCATCAAGGCATGACAGTGGAGATTCTTGTGATAGTTATAGTACTACTGATGATGAAGTTTACAAGCCATGGGCCTGGAGTAGTAGTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGATTTCTCATCGGAAAAAAAAGGTGATGATACAAACAAGGTTGAGAGTTTTCATGTGGGGAGTAAACTTTGGAATAGTAAAAGTTCACCTGAAACTAATAAACACCACCAGAGTGAAGATTTTCAGAAGGTTCGTCCAAAGAATGGCCATGAGTTTCATGATGTTATTAAAACAAAAGGCCGCAGTACTCCAAGAGGTATTGATGTTTTCAATATTCTTATAGATTCCATAATTGCGGACAAAGAACTGCCTTCAGATGAGTTAGATCCTCCTACAAGTCAAGTCTCCCGTATGCCTCTTCCTTTGAAGTTTGGATTGATGGAACCACCTCTTCCAGAGAAGTCAGAGGAAGAAAAAGAATTGGATAAACTCTGGGCAGAGCTTGACTTTGCTCTCAGATCCAGTGAGATCGGGCTGGTGGATTCTAATACAGTTGAACACGAAGATGCTTTTCCTTCAAAGCTTGAGCAAGTAGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAGATGCAGATGGTGTTCATATGTCCAATTGGAAATCAGAGATATTGTACCTTCTTTTGATACAAATCCACATGGAAAGTCACAGAAGAGGGAATCTGGCTCATTTGAGAACGTTAAATATGATGACCTTCAAGAGGATTTTGATTGTGACCACCGTGATGGATCTGATTCACGATCTCATTTTGGACGCACAGTGTGGGATATCATTCCTGGTATAAGGAATAGCATGTACCCACACCAGCGTGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGAGGAATTTATCTTGATGAGTTGAGAGATAAAAACAGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTAATTTTCTTCAGACATACATGGAATTAAATCCAACATGCCGTCCAATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTCTCTTTCGAGGAGAATATTTCAGCCCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAAATGTGGACAACATACGGCTTGTAAAACTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGGAAGAATTCTAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTCCCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAAACAGAAAGGCGCATTATCCTCTCTGGAACTCCATTCCAGAACAATTTTACTGAATTTTACAATACACTTCGGTTGGTGAGGCCAAACTTTGCAGATGAAAGTAATTCTGGAGGTGATGAATGCATGGATAAGAAGCGTGGACGACCAAAAAATATCTCAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAACTGGAAAGTGCTGAATTGAAAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTGTATAGGGGCAGCATACTACAGGAGAAACTTCCAGGGTTGAGGAAATCTACAGTTATATTATGGCCAGCAGAGCTGCAGAAGAGTTTTCTTGAGAGAATTCAAGCAAGGAAGCATTCTTTTGAAGTGGAATATGTTGAGTCCTTGATCTCCGTACACCCTTCTTTGATACTGAAATGTGATAAAGGAGACTGTGAGGTTGACAAGGATATGTTAGAGAGGTTTAGATTGAATCCTGAACTTGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTCAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATATATTGAACCATTGTCCTTTATAGAAGAGCATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGCGAGATAAAGAAACGACAAGCATTAATAAATACCTTTAATGATCCAACAAGTGAAGTTAGGGTATTGCTTGCATCTACAAAGGCTTGCTCGGAAGGTATAAACCTTATTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCCATATGCCGAGCGTATAGACTTGGGCAGAAGAAGGTTGTTTATGTCTATCATCTCATTACCTCTGGGACAAGGGAAGAAGAGAAATACAGTCGACAAGTGGAAAAAGATCGATTGTCTCAGTTAGTTTTTTCTTCTGAACAGAACAGTAATGAAGTCAAAGTATCATCCACAGATCTAGATGACAGAATTTTGGAAGCTATAGTTAATGGACAGGAGTACTTTTGGGCACTGATTTTTGTGGACTTGCAACGATACAGCAGTACCGTGGTAAGCATCGCTAACTTGCATTTCATTTGTTATGGATCCATTTGA 3744 40.38 MVDYSLPVSKRTRLRRAMAGMEDLEQRKKRRKKSRTDSSSDNVRGQASSGKRVNDFEHSSVNRTMEVNPVRLYDDSEGDSLEEIDAVAFGREGADSVTFVDSESSGLKNVKKCSTKGFQKGNIDLIDLEHEVILSDDEEGFGFDSVNSMCSISRSATAAASKDGGFVSFDLDNEDDSSGLLSSGKGKDTFEISPDKSTGGSDCLNSNGCESGGCSYKTEPTCSSDEAVDDSTELGASSSEEEFDDSSDRNYELEESDGAISESSSSEDGKSNGSYCAEVRNKRERKERRKGGNLIEGGLRRRKAYGLDILVDFDKDGNNKNVKVGEQVNCIARRTRSRFGFRVRKINTDLGTVSQPLCIDEEGSEFQCDEKELDSSSRHDSGDSCDSYSTTDDEVYKPWAWSSSKKRTQFNNQSDDDFSSEKKGDDTNKVESFHVGSKLWNSKSSPETNKHHQSEDFQKVRPKNGHEFHDVIKTKGRSTPRGIDVFNILIDSIIADKELPSDELDPPTSQVSRMPLPLKFGLMEPPLPEKSEEEKELDKLWAELDFALRSSEIGLVDSNTVEHEDAFPSKLEQVDLCLRGDHQLILDEQIGLRCRWCSYVQLEIRDIVPSFDTNPHGKSQKRESGSFENVKYDDLQEDFDCDHRDGSDSRSHFGRTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELRDKNSLNNGSGCIVSHAPGTGKTRLTINFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWNVGIPFHNLNKRDFSFEENISALKFLMQASPSGQNVDNIRLVKLFSWKKEKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFYNTLRLVRPNFADESNSGGDECMDKKRGRPKNISRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKSFLERIQARKHSFEVEYVESLISVHPSLILKCDKGDCEVDKDMLERFRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDPTSEVRVLLASTKACSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSQLVFSSEQNSNEVKVSSTDLDDRILEAIVNGQEYFWALIFVDLQRYSSTVVSIANLHFICYGSI 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14947959 14954122 + CcPI632755_09g013160.1 Cco09g1316 187773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1316 1247 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 10 1215 IPR044567 GO:0080188(InterPro)
Cco09g1316 1247 Gene3D - 645 922 IPR038718 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 410 432 - -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 220 234 - -
Cco09g1316 1247 CDD SF2_C_SNF 1031 1163 IPR049730 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 1 61 - -
Cco09g1316 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 895 IPR027417 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 448 474 - -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 369 391 - -
Cco09g1316 1247 Pfam Helicase conserved C-terminal domain 1034 1152 IPR001650 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 15 39 - -
Cco09g1316 1247 SMART ultradead3 664 918 IPR014001 -
Cco09g1316 1247 Pfam SNF2-related domain 671 988 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cco09g1316 1247 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 695 892 IPR014001 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 220 289 - -
Cco09g1316 1247 SMART helicmild6 1063 1152 IPR001650 -
Cco09g1316 1247 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1040 1204 IPR001650 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 177 202 - -
Cco09g1316 1247 Gene3D - 967 1219 IPR027417 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 235 251 - -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 257 272 - -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 40 61 - -
Cco09g1316 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1191 IPR027417 -
Cco09g1316 1247 MobiDBLite consensus disorder prediction 406 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1316 K10875 - - csv:105435045 1915.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0492 Cco-Chr7:6030233 Cco09g1316 Cco-Chr9:14947959 1.10E-97 dispersed
Cco09g1316 Cco-Chr9:14947959 Cco11g0421 Cco-Chr11:4350914 2.60E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59974 PF00176 SNF2_N 1.20E-19 CL0023 Cco TR