Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1326 ATGGAGCTCTCACTTAAATGTGGCTTTTTTGGCTGCCTCTTGCTTGTGCTCTTGCCTGTGCTGTGCTTCTCTCAAGACAATTTTGTTTACTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGAACACCATCTGGGGCCTGTGGATTTGGTGAATTTGGAAGAACTGTGAATGATGGCAATGTTGCTGCAGTTTCCTATCTCTATAGAAATGGTTCTGGTTGTGGTGCATGTTACCAGGTTAGGTGCACCAATCCAAAATATTGTAGTGGCAGTGGAGCCTATGTAGTGGTGACAGACCATGGTGAAGGTGATTACACTGACTTTATATTGAGCCCAAAAGCCTATGCGAAAATGGCTCATCCAAACACAGCCTTAGAATTGTTCTCATATGGTGTTGTTGATGTTGAATTCAGAAGGGTGTCTTGCCAATACCCTAATTACAATACTCTCAAATTCAAGGTTCATGACAATAGTAGATACCCTGATTATTTGGCCATTCTTATCATTTATGTTGCTGGCAAAAATGATATCACTGCTGTTGAGTTGTGGCAGGAAGATTGCAAAGAATGGAAGGGGATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAATCCTCCTAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTATGGGACATGGAAGGTGGGTGGTGGCAAACAATGCTCTCCCAAGCTATTGGAAGGCAGGAGTTGCTTATGACACTGACATTCACCTGTATTAA 759 42.95 MELSLKCGFFGCLLLVLLPVLCFSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAYVVVTDHGEGDYTDFILSPKAYAKMAHPNTALELFSYGVVDVEFRRVSCQYPNYNTLKFKVHDNSRYPDYLAILIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSMGHGRWVVANNALPSYWKAGVAYDTDIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15401609 15405618 - CcPI632755_09g013260.1 Cco09g1326 187783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1326 252 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Cco09g1326 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Cco09g1326 252 Gene3D - 21 144 IPR036908 -
Cco09g1326 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Cco09g1326 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Cco09g1326 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576(InterPro)
Cco09g1326 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cco09g1326 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Cco09g1326 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Cco09g1326 252 PANTHER EXPANSIN-B3 13 250 - -
Cco09g1326 252 Gene3D - 145 248 IPR036749 -
Cco09g1326 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Cco09g1326 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Cco09g1326 252 Pfam Lytic transglycolase 66 138 IPR009009 -
Cco09g1326 252 CDD DPBB_EXLB_N 29 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1286 Cco-Chr9:14098488 Cco09g1326 Cco-Chr9:15401609 1.10E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1326 - - - 0.0