Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1334 ATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAATAAAGAAGTTAAACTGCTTAAAAGAAAGCTGCAACAAGCAGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTACCAAAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCTTCTGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGTGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCTATATGGATCAGGAGTACAGCAAGAGCAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCCGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAACAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAATTGCGTGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCATGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCATCCTCTCATTCTGGTGCTGATAGCTATGGCTCAGACTCGCATACTTTGGATTGTAAAATAAATGTCGATCATCGGGTTATGGGATTTGGGTTACTTTACCCTCTTCAGCTTAGGCCCAGGTTCAGTGAATGGATTGCAGAGCTTCCATGGTTGTCATCGTTTATGTCTAACCTCGAGCTTCATGAGTTTAACAACAAGAACACATTCCAAGATCTTCGAAACTGGAAGTGA 1785 42.52 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKNISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYQRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQCLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNLYGSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDNNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFMEESSDQDLLLDVRSNSSFPQAELLHPSSHSGADSYGSDSHTLDCKINVDHRVMGFGLLYPLQLRPRFSEWIAELPWLSSFMSNLELHEFNNKNTFQDLRNWK 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15555112 15564981 - CcPI632755_09g013340.1 Cco09g1334 187791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1334 594 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1334 594 Gene3D - 294 385 IPR038108 -
Cco09g1334 594 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1334 594 Pfam Asx homology domain 286 370 IPR028020 -
Cco09g1334 594 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 406 IPR044867 -
Cco09g1334 594 MobiDBLite consensus disorder prediction 106 133 - -
Cco09g1334 594 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco09g1334 594 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Cco09g1334 594 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cco09g1334 594 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1334 594 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0230 Cco-Chr10:2419284 Cco09g1334 Cco-Chr9:15555112 1.90E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59975 PF13919 ASXH 5.10E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1334 - - - 0.0