Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1423 ATGAAGCTCATCCCCTTCCTTCCATGGCTGAACCTCCACATGGCCCTCTTCTTCTTCTTCTTCTTCCTTGCTTCTTCTTCACTTCTTCATTCATCCCCTGCCTCTTCACTTGCCCACAATGAAGGACGAGCGCTTATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGACGATCACAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCTGTTGCTGCTTTTGACTTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTCGAGTTTTTAAATATGAAGAACAATCAGTTGACCGGTCCGATTCCTTCAACCTTAACCCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTCTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCGTTGTCCTCCGATATGTGTCAATTGACTGGCTTGTGGTATTTTGATGTAAGGGGAAATAATCTGACTGGAACGATACCAGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCTGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGACCAATACCGCCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGTCAATTCCTCCTGAGCTGGGCAATATGTCAAAGCTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTAAATCTTGCCAATAATTATCTTGAAGGACCCATCCCTCAGAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCAGCAAACAACTTCAAAGGCAGGATTCCCATGGAGCTGGGGCGCATAGTAAACCTCGATACATTGGATCTATCTTGCAATTACTTCTTGGGTCCTGTTCCTGCTTCTATTGGTGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTCGTCGGGCCGTTGCCGGCAGAGTTTGGGAATCTCCGAAGTGTTCAGACTATTGATATGTCATTCAACAACTTTTCTGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTGAACAACAACCATTTTCAAGGGAAAATACCTGATCAGCTGACTAATTGTTTCAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTCGAACCAAATAGCTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGGTCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTGGTGGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCCGTTTACAAGTCGAATCCCTCGAAGCAATTGATGAAGGGTTCTAGCAAGACCGGGCAAGGTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTACGGAGCTTCTAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTATAATCACTACGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGGACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAAATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTCGGGATTGCCAAATGCATCCCAACTGCCAAAACACACGCGTCGACTTATGTGCTTGGAACAATTGGCTACATTGATCCAGAGTATGCCCGGACCTCCCGGCTTAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTTGAACTACTGACCGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCTGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCACGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCACCACCTACTGTGAAACAAACTTCATTCCCCACGAAAACGGTGGATTACGCACAGTTCGTGATCGAAAAGGGTCAGAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTGATGTCTGAACAACACAGTTTGAATCAATAA 2856 43.35 MKLIPFLPWLNLHMALFFFFFFLASSSLLHSSPASSLAHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAAFDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPQNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPMELGRIVNLDTLDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPNSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQGPPNLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKTDNNTVMEAVDPEVSVTCIDLAHVRKTFQLALLCTKHNPSERPTMHEVARVLISLQPPPPPTVKQTSFPTKTVDYAQFVIEKGQNRNLKGQEEQQKSDVNTSDARWFVRFGEVMSEQHSLNQ 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18609304 18615039 - CcPI632755_09g014230.1 Cco09g1423 187880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1423 951 CDD STKc_IRAK 621 884 - -
Cco09g1423 951 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 691 891 - -
Cco09g1423 951 Gene3D Ribonuclease Inhibitor 270 544 IPR032675 -
Cco09g1423 951 Gene3D Ribonuclease Inhibitor 89 269 IPR032675 -
Cco09g1423 951 Gene3D Ribonuclease Inhibitor 34 88 IPR032675 -
Cco09g1423 951 SMART serkin_6 615 882 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1423 951 Pfam Protein kinase domain 618 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1423 951 ProSiteProfiles Protein kinase domain profile. 615 884 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1423 951 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524(InterPro)
Cco09g1423 951 SUPERFAMILY Protein kinase-like (PK-like) 592 882 IPR011009 -
Cco09g1423 951 SUPERFAMILY L domain-like 369 528 - -
Cco09g1423 951 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 359 882 IPR050647 GO:0009553(PANTHER)|GO:0010103(PANTHER)|GO:0048481(PANTHER)
Cco09g1423 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1423 951 Gene3D Transferase(Phosphotransferase) domain 1 691 888 - -
Cco09g1423 951 Pfam Leucine Rich Repeat 156 175 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 279 298 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 325 346 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 132 152 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 300 322 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 205 226 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 492 509 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 230 248 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 Pfam Leucine Rich Repeat 372 392 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515(InterPro)
Cco09g1423 951 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 265 539 - -
Cco09g1423 951 SMART LRR_typ_2 154 178 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 298 322 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 370 394 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 250 274 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 418 441 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 130 153 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 466 490 IPR003591 -
Cco09g1423 951 SMART LRR_typ_2 202 226 IPR003591 -
Cco09g1423 951 Gene3D Phosphorylase Kinase; domain 1 581 690 - -
Cco09g1423 951 FunFam Piriformospora indica-insensitive protein 2 80 173 - -
Cco09g1423 951 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 251 - -
Cco09g1423 951 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 586 690 - -
Cco09g1423 951 SUPERFAMILY RNI-like 89 393 - -
Cco09g1423 951 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1804 Cco-Chr5:26790244 Cco09g1423 Cco-Chr9:18609304 3.10E-150 dispersed
Cco09g1423 Cco-Chr9:18609304 Cco11g1674 Cco-Chr11:29582767 8.70E-66 dispersed
Cco09g1423 Cco-Chr9:18609304 Cco11g1766 Cco-Chr11:30386896 2.90E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87105 PF00069 Pkinase 5.30E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1423 K20718 - csv:101213139 1738.01