Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1453 ATGATTGAAGATTACATTTCTGAGTTCAGTTCTATTCCAAAGGAGAGTTTAAATTTTGGTGCACAAGATCATCTTCAGAGCTATTATGGCTGCAGTGCTGAAATGTTTGCTGTGTGTAAAGTTTGTGCTTTAGGACTCAAATCAAACGACACACTCTTTGACTCAATCAGCTCTATCAACACATTTGAACTAAGAGAAGTGGGTCAAGGAGAGCTGAAGAGTGAAGACCACATTTTTTCCATCTGGGTTTCTGTTTTTCTCTTCATTACTTACTTCTCTTCATCCTTCCCTGTTACTTTTGCATGTGGAATTCAGTTTCTCTTTGTTTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA 1482 44.67 MIEDYISEFSSIPKESLNFGAQDHLQSYYGCSAEMFAVCKVCALGLKSNDTLFDSISSINTFELREVGQGELKSEDHIFSIWVSVFLFITYFSSSFPVTFACGIQFLFVFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19627487 19632185 - CcPI632755_09g014530.1 Cco09g1453 187910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1453 493 ProSitePatterns Actins signature 2. 474 482 IPR004001 -
Cco09g1453 493 SUPERFAMILY Actin-like ATPase domain 265 493 IPR043129 -
Cco09g1453 493 Gene3D Actin; Chain A, domain 4 298 389 - -
Cco09g1453 493 FunFam Putative actin-related protein 5 457 485 - -
Cco09g1453 493 SUPERFAMILY Actin-like ATPase domain 122 271 IPR043129 -
Cco09g1453 493 Gene3D - 256 456 - -
Cco09g1453 493 PANTHER ACTIN 124 485 IPR004000 -
Cco09g1453 493 FunFam Major actin 377 456 - -
Cco09g1453 493 SMART actin_3 123 493 IPR004000 -
Cco09g1453 493 ProSitePatterns Actins signature 1. 171 181 IPR004001 -
Cco09g1453 493 CDD NBD_sugar-kinase_HSP70_actin 126 299 - -
Cco09g1453 493 ProSitePatterns Actins and actin-related proteins signature. 222 234 IPR020902 -
Cco09g1453 493 FunFam Actin, alpha skeletal muscle 119 279 - -
Cco09g1453 493 Gene3D - 126 487 - -
Cco09g1453 493 Pfam Actin 121 493 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 354 370 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 167 178 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 258 277 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 144 153 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 179 201 IPR004000 -
Cco09g1453 493 PRINTS Actin signature 233 246 IPR004000 -
Cco09g1453 493 FunFam Actin, muscle 298 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1690 Cco-Chr6:27452068 Cco09g1453 Cco-Chr9:19627487 1.20E-74 dispersed
Cco09g0389 Cco-Chr9:3544131 Cco09g1453 Cco-Chr9:19627487 3.40E-55 dispersed
Cco09g1453 Cco-Chr9:19627487 Cco10g1738 Cco-Chr10:30921785 1.00E-211 dispersed
Cco09g1453 Cco-Chr9:19627487 Cco04g1320 Cco-Chr4:28536646 2.10E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1453 K10355 - csv:101214459 755.362