Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1453 | ATGATTGAAGATTACATTTCTGAGTTCAGTTCTATTCCAAAGGAGAGTTTAAATTTTGGTGCACAAGATCATCTTCAGAGCTATTATGGCTGCAGTGCTGAAATGTTTGCTGTGTGTAAAGTTTGTGCTTTAGGACTCAAATCAAACGACACACTCTTTGACTCAATCAGCTCTATCAACACATTTGAACTAAGAGAAGTGGGTCAAGGAGAGCTGAAGAGTGAAGACCACATTTTTTCCATCTGGGTTTCTGTTTTTCTCTTCATTACTTACTTCTCTTCATCCTTCCCTGTTACTTTTGCATGTGGAATTCAGTTTCTCTTTGTTTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA | 1482 | 44.67 | MIEDYISEFSSIPKESLNFGAQDHLQSYYGCSAEMFAVCKVCALGLKSNDTLFDSISSINTFELREVGQGELKSEDHIFSIWVSVFLFITYFSSSFPVTFACGIQFLFVFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19627487 | 19632185 | - | CcPI632755_09g014530.1 | Cco09g1453 | 187910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1453 | 493 | ProSitePatterns | Actins signature 2. | 474 | 482 | IPR004001 | - | |
Cco09g1453 | 493 | SUPERFAMILY | Actin-like ATPase domain | 265 | 493 | IPR043129 | - | |
Cco09g1453 | 493 | Gene3D | Actin; Chain A, domain 4 | 298 | 389 | - | - | |
Cco09g1453 | 493 | FunFam | Putative actin-related protein 5 | 457 | 485 | - | - | |
Cco09g1453 | 493 | SUPERFAMILY | Actin-like ATPase domain | 122 | 271 | IPR043129 | - | |
Cco09g1453 | 493 | Gene3D | - | 256 | 456 | - | - | |
Cco09g1453 | 493 | PANTHER | ACTIN | 124 | 485 | IPR004000 | - | |
Cco09g1453 | 493 | FunFam | Major actin | 377 | 456 | - | - | |
Cco09g1453 | 493 | SMART | actin_3 | 123 | 493 | IPR004000 | - | |
Cco09g1453 | 493 | ProSitePatterns | Actins signature 1. | 171 | 181 | IPR004001 | - | |
Cco09g1453 | 493 | CDD | NBD_sugar-kinase_HSP70_actin | 126 | 299 | - | - | |
Cco09g1453 | 493 | ProSitePatterns | Actins and actin-related proteins signature. | 222 | 234 | IPR020902 | - | |
Cco09g1453 | 493 | FunFam | Actin, alpha skeletal muscle | 119 | 279 | - | - | |
Cco09g1453 | 493 | Gene3D | - | 126 | 487 | - | - | |
Cco09g1453 | 493 | Pfam | Actin | 121 | 493 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 354 | 370 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 167 | 178 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 258 | 277 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 144 | 153 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 179 | 201 | IPR004000 | - | |
Cco09g1453 | 493 | PRINTS | Actin signature | 233 | 246 | IPR004000 | - | |
Cco09g1453 | 493 | FunFam | Actin, muscle | 298 | 389 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1690 | Cco-Chr6:27452068 | Cco09g1453 | Cco-Chr9:19627487 | 1.20E-74 | dispersed | |
Cco09g0389 | Cco-Chr9:3544131 | Cco09g1453 | Cco-Chr9:19627487 | 3.40E-55 | dispersed | |
Cco09g1453 | Cco-Chr9:19627487 | Cco10g1738 | Cco-Chr10:30921785 | 1.00E-211 | dispersed | |
Cco09g1453 | Cco-Chr9:19627487 | Cco04g1320 | Cco-Chr4:28536646 | 2.10E-212 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1453 | K10355 | - | csv:101214459 | 755.362 |