Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1471 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCGGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCGTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACCGCTCAACACCCCCGGCCATCAATGCCTTTCATGCCATGGCCACATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.69 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20037578 20038378 - CcPI632755_09g014710.1 Cco09g1471 187928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1471 266 MobiDBLite consensus disorder prediction 250 266 - -
Cco09g1471 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Cco09g1471 266 MobiDBLite consensus disorder prediction 55 76 - -
Cco09g1471 266 MobiDBLite consensus disorder prediction 236 266 - -
Cco09g1471 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677(InterPro)
Cco09g1471 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 251 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco09g1471 266 MobiDBLite consensus disorder prediction 1 76 - -
Cco09g1471 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Cco09g1471 266 MobiDBLite consensus disorder prediction 1 19 - -
Cco09g1471 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1753 Cco-Chr3:32249669 Cco09g1471 Cco-Chr9:20037578 4.10E-29 dispersed
Cco06g1989 Cco-Chr6:30047474 Cco09g1471 Cco-Chr9:20037578 9.70E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59981 PF00125 Histone 6.00E-18 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1471 K08066 - csv:101213813 414.846