Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1497 ATGGACAACATTACTGCCCAATTAAAGAGGGGAATCTCCCGCCAATTCTCCACCGGCTCCTTACGCCGAACCCTAAGTCGTCAGTTCACCCGCCAATCCTCTCTTGACCCTAGGAGGAACAATTTGAGATTCAGCTTTGGCCGACAATCTTCTTTGGACCCTATTCGCCGCTGTCCTGATGATGATAATGAGCTTTCCGTTCCTGAGAATTTGGATTTCACTATGCAGCTTCTCTTTATGGCCTGCCGTGGCGATGTTAGAGGCGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGAGGTTGTTAAGCTTTTGCTTAGCCGTAGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTACGGAAATACAGAAATTTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTTAGGAAGACACCGATGACTGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGACGTATCAAGTTGCCAAATGGAATGGTACAAAAGTCGCTGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCCGAATACCATCCTAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTCGCCCTTGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTTAAAGTTGCTGGATTCGGCTTGATAAGATTGTCAAAAATGTCACCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGATTATTCGAACTCGTACTTAGCACCCGAGATTTACCACGATGAAATATTTGACAGAAGCGTCGATGCATTTTCATTCGGTCTCATTTTATACGAGATGGTTGAGGGTATTCAACCATTTCATCCCAAGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTAATGAGGCCTACTTTCTCGGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTTAAACTTCCCTGGAAATAA 1422 42.19 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNELSVPENLDFTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNSYLAPEIYHDEIFDRSVDAFSFGLILYEMVEGIQPFHPKPPEEVAKAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20461374 20465507 + CcPI632755_09g014970.1 Cco09g1497 187954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1497 473 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Cco09g1497 473 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1497 473 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
Cco09g1497 473 SUPERFAMILY Protein kinase-like (PK-like) 202 451 IPR011009 -
Cco09g1497 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cco09g1497 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1497 473 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Cco09g1497 473 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Cco09g1497 473 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Cco09g1497 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Cco09g1497 473 Pfam Protein tyrosine and serine/threonine kinase 199 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1497 473 CDD STKc_MAP3K-like 199 451 - -
Cco09g1497 473 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1497 473 PIRSF ILK 8 472 - -
Cco09g1497 473 FunFam Integrin-linked protein kinase 1 47 184 - -
Cco09g1497 473 Gene3D - 55 184 IPR036770 -
Cco09g1497 473 Gene3D Transferase(Phosphotransferase) domain 1 269 467 - -
Cco09g1497 473 SUPERFAMILY Ankyrin repeat 76 176 IPR036770 -
Cco09g1497 473 FunFam Os01g0748600 protein 179 470 - -
Cco09g1497 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 452 IPR051681 GO:0004674(PANTHER)
Cco09g1497 473 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2191 Cco-Chr4:35553621 Cco09g1497 Cco-Chr9:20461374 4.10E-69 dispersed
Cco05g2670 Cco-Chr5:34735180 Cco09g1497 Cco-Chr9:20461374 8.50E-59 dispersed
Cco09g1497 Cco-Chr9:20461374 Cco11g1512 Cco-Chr11:27937166 1.80E-40 dispersed
Cco09g1497 Cco-Chr9:20461374 Cco02g1958 Cco-Chr2:32505450 4.00E-88 transposed
Cco09g1497 Cco-Chr9:20461374 Cco03g0718 Cco-Chr3:7372282 4.00E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87106 PF07714 PK_Tyr_Ser-Thr 4.30E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1497 - - - 0.0