Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1497 | ATGGACAACATTACTGCCCAATTAAAGAGGGGAATCTCCCGCCAATTCTCCACCGGCTCCTTACGCCGAACCCTAAGTCGTCAGTTCACCCGCCAATCCTCTCTTGACCCTAGGAGGAACAATTTGAGATTCAGCTTTGGCCGACAATCTTCTTTGGACCCTATTCGCCGCTGTCCTGATGATGATAATGAGCTTTCCGTTCCTGAGAATTTGGATTTCACTATGCAGCTTCTCTTTATGGCCTGCCGTGGCGATGTTAGAGGCGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGAGGTTGTTAAGCTTTTGCTTAGCCGTAGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTACGGAAATACAGAAATTTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTTAGGAAGACACCGATGACTGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGACGTATCAAGTTGCCAAATGGAATGGTACAAAAGTCGCTGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCCGAATACCATCCTAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTCGCCCTTGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTTAAAGTTGCTGGATTCGGCTTGATAAGATTGTCAAAAATGTCACCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGATTATTCGAACTCGTACTTAGCACCCGAGATTTACCACGATGAAATATTTGACAGAAGCGTCGATGCATTTTCATTCGGTCTCATTTTATACGAGATGGTTGAGGGTATTCAACCATTTCATCCCAAGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTAATGAGGCCTACTTTCTCGGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTTAAACTTCCCTGGAAATAA | 1422 | 42.19 | MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNELSVPENLDFTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNSYLAPEIYHDEIFDRSVDAFSFGLILYEMVEGIQPFHPKPPEEVAKAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 20461374 | 20465507 | + | CcPI632755_09g014970.1 | Cco09g1497 | 187954 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1497 | 473 | FunFam | serine/threonine-protein kinase STY46-like | 186 | 269 | - | - | |
Cco09g1497 | 473 | SMART | serkin_6 | 193 | 455 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g1497 | 473 | Gene3D | Phosphorylase Kinase; domain 1 | 187 | 268 | - | - | |
Cco09g1497 | 473 | SUPERFAMILY | Protein kinase-like (PK-like) | 202 | 451 | IPR011009 | - | |
Cco09g1497 | 473 | ProSiteProfiles | Ankyrin repeat region circular profile. | 105 | 137 | - | - | |
Cco09g1497 | 473 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 310 | 322 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g1497 | 473 | SMART | ANK_2a | 73 | 101 | IPR002110 | GO:0005515(InterPro) | |
Cco09g1497 | 473 | SMART | ANK_2a | 105 | 134 | IPR002110 | GO:0005515(InterPro) | |
Cco09g1497 | 473 | SMART | ANK_2a | 138 | 167 | IPR002110 | GO:0005515(InterPro) | |
Cco09g1497 | 473 | ProSiteProfiles | Ankyrin repeat profile. | 105 | 137 | IPR002110 | GO:0005515(InterPro) | |
Cco09g1497 | 473 | Pfam | Protein tyrosine and serine/threonine kinase | 199 | 451 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g1497 | 473 | CDD | STKc_MAP3K-like | 199 | 451 | - | - | |
Cco09g1497 | 473 | ProSiteProfiles | Protein kinase domain profile. | 189 | 455 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g1497 | 473 | PIRSF | ILK | 8 | 472 | - | - | |
Cco09g1497 | 473 | FunFam | Integrin-linked protein kinase 1 | 47 | 184 | - | - | |
Cco09g1497 | 473 | Gene3D | - | 55 | 184 | IPR036770 | - | |
Cco09g1497 | 473 | Gene3D | Transferase(Phosphotransferase) domain 1 | 269 | 467 | - | - | |
Cco09g1497 | 473 | SUPERFAMILY | Ankyrin repeat | 76 | 176 | IPR036770 | - | |
Cco09g1497 | 473 | FunFam | Os01g0748600 protein | 179 | 470 | - | - | |
Cco09g1497 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 75 | 452 | IPR051681 | GO:0004674(PANTHER) | |
Cco09g1497 | 473 | Pfam | Ankyrin repeats (3 copies) | 78 | 165 | IPR002110 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2191 | Cco-Chr4:35553621 | Cco09g1497 | Cco-Chr9:20461374 | 4.10E-69 | dispersed | |
Cco05g2670 | Cco-Chr5:34735180 | Cco09g1497 | Cco-Chr9:20461374 | 8.50E-59 | dispersed | |
Cco09g1497 | Cco-Chr9:20461374 | Cco11g1512 | Cco-Chr11:27937166 | 1.80E-40 | dispersed | |
Cco09g1497 | Cco-Chr9:20461374 | Cco02g1958 | Cco-Chr2:32505450 | 4.00E-88 | transposed | |
Cco09g1497 | Cco-Chr9:20461374 | Cco03g0718 | Cco-Chr3:7372282 | 4.00E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87106 | PF07714 | PK_Tyr_Ser-Thr | 4.30E-51 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1497 | - | - | - | 0.0 |