Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1651 ATGGCGAAGTTGATGATTCTTCTCAATCTCTTCATGTTCCTTGCTTGCTTTGCATCCATTTCTCAAGGCCAATTGAAATTTGGATTCTATGCTCGATCTTGTCCTTCCGCTGAATCCGTTGTTCGTAGCGTCGTAAACAACGCCGTTCAAAACAATGCCAACATGGCCGCCGTATTGCTCCGACTCCACTTCCACGACTGTTTTGTCGAGGGTTGCGATGGTTCAATCTTAATTGACAACGGGCCGAGGTCGGAGAGACTTGCATTTGGGCATCAAGGAGTAGGGGGTTTCGAGGTAATAGAAAGAGCAAAAGGAGAATTAGAAGCACAATGTCCTGGAGTAGTTTCTTGTGCTGACATCGTGGCTATGGCGGCTAGAGATGCTATTGTTATGGCAAATGGACCGGATTACGAGGTTCTGACCGGTCGGAGAGACGGTAGGGTTTCGGATATTTCTCTGGCGGATGAGCTGCCGGATGTGAGTGATTCAGTTCAAGTATTGAAGAACAAATTTGCTCAGAAAGGGATGAGTGATAAGGACTTGGTTTTACTCACTGCGGCCCACACAATCGGAACCACCGCATGCTTCTTCATGACAAAACGCCTCTACGACTTCTTCCCGGGAGGCGGCGGCGGATCGGACCCGGACATAAGCCCTACATTGCTGCCGGAGTTGAAGTCACAATGTCCTCGAAATGGCGACGTCAATGCCCGCCTTGGCATTGACCGTGGCAGCCCCCGCACCTTCGACATTAGCATTCTTCAAAACATAAGAAATGGCTTCGCCATCCTCGCCTCCGATGCCCGTCTAAATGACGACCCATCGACCCGAGCCGTCATCGACTCGTACTTGAGCCCCCTCGCCCCCATCCTTGGCCCCTCATTTCAGGATGATTTTATAAACTCCATTGTGAGAATGGGTCAGATTGGGACCAAAACTGGCTCTCAAGGAGAGATTCGAAGGGTTTGTTCTGCTTTTAACTCAAGGTAA 990 49.9 MAKLMILLNLFMFLACFASISQGQLKFGFYARSCPSAESVVRSVVNNAVQNNANMAAVLLRLHFHDCFVEGCDGSILIDNGPRSERLAFGHQGVGGFEVIERAKGELEAQCPGVVSCADIVAMAARDAIVMANGPDYEVLTGRRDGRVSDISLADELPDVSDSVQVLKNKFAQKGMSDKDLVLLTAAHTIGTTACFFMTKRLYDFFPGGGGGSDPDISPTLLPELKSQCPRNGDVNARLGIDRGSPRTFDISILQNIRNGFAILASDARLNDDPSTRAVIDSYLSPLAPILGPSFQDDFINSIVRMGQIGTKTGSQGEIRRVCSAFNSR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26979969 26985706 + CcPI632755_09g016510.1 Cco09g1651 188108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1651 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cco09g1651 329 Gene3D Peroxidase, domain 2 158 306 - -
Cco09g1651 329 CDD secretory_peroxidase 24 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco09g1651 329 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 FunFam Peroxidase 158 306 - -
Cco09g1651 329 ProSiteProfiles Plant heme peroxidase family profile. 24 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 Gene3D - 28 327 - -
Cco09g1651 329 PANTHER PEROXIDASE 25-RELATED 17 323 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco09g1651 329 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cco09g1651 329 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cco09g1651 329 SUPERFAMILY Heme-dependent peroxidases 24 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1651 329 FunFam Peroxidase 28 175 - -
Cco09g1651 329 Pfam Peroxidase 41 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1651 Cco-Chr9:26979969 Cco09g1704 Cco-Chr9:28430584 1.10E-76 dispersed
Cco09g1651 Cco-Chr9:26979969 Cco02g0178 Cco-Chr2:1727025 5.10E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1651 K00430 - csv:101221831 524.628