Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1677 ATGACCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCGCCTTCCCTGCGCTTAATTTTGGCTATGGCGTTCGTTTTGCGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGGAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGAGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCATTCTCTCTTTTCACACCAATCAGCGAAGGGAGCTGCAATCGAGTGCATCTTTCTTCTAGTAGGTCTGGTTTTGCTTCACTTTCTTTTGAGGTAATAGACAAGGCCTTGCGAGGTTCAAGAAATAATGGTGATGCATTAGAGGCCGAGGGCCCTCCACCTCCTTCTCATCGAGCTCCTCAATTTTATTTTGCCAATAATCCTCTTCACATTTCTCCCTCTGCTCCTCCTCCCCCAATGAGAGATACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCGACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGCGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGTTTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGGAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGCGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCACCACTTAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGGAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTTCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCAGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCCACCACCGGAGTAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 2052 43.18 MTCGEMRSNEMGRATLMFSAFSPSLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCTWFHVTCDEKGSVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLSKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISEGSCNRVHLSSSRSGFASLSFEVIDKALRGSRNNGDALEAEGPPPPSHRAPQFYFANNPLHISPSAPPPPMRDTPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWRRKTQQDHFFDVAAEEDPEINLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEEPAEVGELQFQTEVAMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLGGNYVEEELEQVIQVSLLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSHHRSRTPQFIDSTSHIAPDVLSGPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27767792 27787847 - CcPI632755_09g016770.1 Cco09g1677 188134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1677 683 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515(InterPro)
Cco09g1677 683 SUPERFAMILY L domain-like 41 224 - -
Cco09g1677 683 Gene3D Transferase(Phosphotransferase) domain 1 432 649 - -
Cco09g1677 683 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524(InterPro)
Cco09g1677 683 FunFam Somatic embryogenesis receptor-like kinase 1 432 649 - -
Cco09g1677 683 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Cco09g1677 683 FunFam Somatic embryogenesis receptor kinase 1 324 431 - -
Cco09g1677 683 SMART serkin_6 355 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1677 683 MobiDBLite consensus disorder prediction 651 673 - -
Cco09g1677 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1677 683 MobiDBLite consensus disorder prediction 265 286 - -
Cco09g1677 683 Pfam Protein tyrosine and serine/threonine kinase 357 629 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1677 683 Gene3D Phosphorylase Kinase; domain 1 324 431 - -
Cco09g1677 683 Gene3D Ribonuclease Inhibitor 39 218 IPR032675 -
Cco09g1677 683 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1677 683 SUPERFAMILY Protein kinase-like (PK-like) 336 630 IPR011009 -
Cco09g1677 683 FunFam Somatic embryogenesis receptor kinase 1 38 221 - -
Cco09g1677 683 MobiDBLite consensus disorder prediction 649 683 - -
Cco09g1677 683 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 654 - -
Cco09g1677 683 Pfam Leucine Rich Repeat 179 195 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2151 Cco-Chr5:30392144 Cco09g1677 Cco-Chr9:27767792 1.30E-35 dispersed
Cco09g1677 Cco-Chr9:27767792 Cco10g0883 Cco-Chr10:18529458 2.50E-200 dispersed
Cco09g1677 Cco-Chr9:27767792 Cco11g0522 Cco-Chr11:5505113 1.90E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87107 PF00069 Pkinase 1.40E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1677 K13416 - csv:101216386 967.222