Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1700 ATGAGCGGACGAATCGTGAGCGATGAAGGAATGAGACAGGCAGAGCAGAGAAACGAACCGTTGAACATTGCATCACCCTCAAAGGTGGGTGTGCCGCCGAAGAAGAACGTGTGGGAAGAATTTAATTCTGTGGTGAAAGAGACGTTTTTCTCTGATCAGCCACTTCGTCATTTCAAAGACCAACCTAAGCATAAGAAGGTTGCTCTCTTTGTCCAAGGTCTCTTCCCCATATTCCAATGGGGAAGGGGATATAACTTTAGTAAGTTCAAAGGGGATCTCATTGCTGGCTTAACCATTGCTAGTCTCTGCATTCCTCAAGACATTGGATATGCCAAGCTCGCTAATTTACCTTCTGAAAATGGACTTTATAGTAGTTTTGTCCCGCCGTTGGTATACGCGGTGATGGGGAGCTCTAGGGATATTGCAATCGGCCCCGTTGCTGTGGTGTCGCTTTTGCTGGGGACCCTGCTAGGGCAGGTGTACGACCCGGTGAAAGAGGTGGAGCAATACAAACGGCTGGCTTACACGGCAACTTTCTTCGCCGGAGTAACTCAGTTGGCTCTAGGGTTCCTCCGGCTCGGATTCTTGATTGACTTTCTTTCGCACGCCGCGGTCGTCGGGTTCATGGGAGGTGCGGCCGTCACCATCGCCCTTCAGCAGCTGAAAGGTCTTCTTGGCATAGTAAACTTCACCAAGAAAACTGATATAATTTCTGTGATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGGAGACTATACTCATAGGCGTTTCTTTTCTGGCCTTTCTTTTGGCTACAAAATACATTGGCAAGAAATACAAGAAACTGTTCTGGATTCCAGCCATTGCCCCCTTAACATCTGTTATACTTTCCACATTTTTTGTGTACATTACTCGAGCAGATAAACATGGAGTTCAGATTGTAAGACACTTAGATAAAGGAATAAATCCACCATCCCTTGATAAGATATTCTTCCATGGAGACGATCTCACCCAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGGCCTAACGGAAGCAGTGGCAATTGCAAGAACATTTGCAGACCTAAAAGACTATGAGATTGACGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCGTTCTCTCGGTCGGCAGTGAACTACATGGCTGGCTGCAACACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACGTTAGAGCTCATCACGCCTCTTTTCAAGTACACCCCTAATGCCATTCTCGCCTCCATCATTATCTGCGCCGTCATCGGTCTCATCGACATCGATGCCGTGATTTTGCTTTGGAAGATCGACAAATTCGACTTCATTGCCTGCATGGGGGCTTTCTTCGGTGTCATCTTTGATTCCGTTGAGATTGGTCTTCTCATTGCTGTTAGTTTGTCATTGTCCAAAATTCTATTGCAAGTAACAAGACCGAGAATTGCGTTGCTTGGGAAGCTCCCAAAGATTCCTATTTTTAGAAACATTTTGCAGTACCCTGGGGCAAAGAAGATTGCAGGAGTTCTAATGGTTAGGGTTGATTCTTCAATATACTTCTCCAATGCCAATTATGTCAAAGAAAGGATACTGAGATGGCTGGCAGATGAAACAGAGAAGTTAGAAGACCAATCTTTGCCAATCAAAGTCGTGGTCGTCGACATGTCTCCCGTATCCGATATCGACACGAGTGGCATCCATGCCTTGGAGGGTTTGCACTCTCATTTGCATAAAAAGGAAATTGCCCTTGCACTTGCAAATCCAGGCCCAGTGATCATGGAGAAGCTCTTAGCTTCAAACTTTGATAAGCTCATTGGAGAAGACAACATTTTCCTCAGTGTTAACGAAGCTATTAAGATTTATGCCCCAGATGCTATTCTTGATCCTTAA 1956 45.71 MSGRIVSDEGMRQAEQRNEPLNIASPSKVGVPPKKNVWEEFNSVVKETFFSDQPLRHFKDQPKHKKVALFVQGLFPIFQWGRGYNFSKFKGDLIAGLTIASLCIPQDIGYAKLANLPSENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLGQVYDPVKEVEQYKRLAYTATFFAGVTQLALGFLRLGFLIDFLSHAAVVGFMGGAAVTIALQQLKGLLGIVNFTKKTDIISVMRSVWSNVHHGWNWETILIGVSFLAFLLATKYIGKKYKKLFWIPAIAPLTSVILSTFFVYITRADKHGVQIVRHLDKGINPPSLDKIFFHGDDLTQGFKIGVVAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVIFDSVEIGLLIAVSLSLSKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLMVRVDSSIYFSNANYVKERILRWLADETEKLEDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHSHLHKKEIALALANPGPVIMEKLLASNFDKLIGEDNIFLSVNEAIKIYAPDAILDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28186202 28194995 + CcPI632755_09g017000.1 Cco09g1700 188157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1700 651 NCBIfam sulfate permease 76 639 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g1700 651 Pfam STAS domain 523 639 IPR002645 -
Cco09g1700 651 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Cco09g1700 651 MobiDBLite consensus disorder prediction 1 27 - -
Cco09g1700 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
Cco09g1700 651 PANTHER SULFATE TRANSPORTER 61 641 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g1700 651 Gene3D STAS domain 516 646 IPR036513 -
Cco09g1700 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Cco09g1700 651 FunFam Sulfate transporter 31 501 645 - -
Cco09g1700 651 Pfam Sulfate permease family 89 470 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0908 Cco-Chr3:11328490 Cco09g1700 Cco-Chr9:28186202 2.20E-164 dispersed
Cco09g1700 Cco-Chr9:28186202 Cco11g0144 Cco-Chr11:1496493 4.60E-175 dispersed
Cco09g1700 Cco-Chr9:28186202 Cco11g1584 Cco-Chr11:28730051 1.20E-247 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1700 K17470 - csv:101202746 1186.4