Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1704 ATGCAAACTTCATCCCAAACAAACCTCTCTTCTATTCTCAATTCTCTTATTCCAATGACAAAACTTCGTTTTAATCCATTGCTCGTCTTGGTTGTGTCTATCGCAGTGCTATTCACCTTTTGTACCACCCTCGTGCATGGCCAAGCTACACGCATTGGTTTCTACTCCAACTCTTGCCCTCAAGTCGAGTCCATTGTTGCATCAACAGTCCGATCTCATTTTCAATCTGACCCTAGAATTGCTCCAGGTTTGTTAAGAATGCACTTCCATGACTGTTTCGTTCGGGGTTGTGATGCTTCTGTGCTTCTTGCTGGCTCCAATAGCGAGAGGACTGCGCCGCCCAACCTTTCGTTAAATGGGTTTGAAGTGATTGATGATGCTAAGTCTCAGCTCGAAGCTGCTTGTCCAGGCGTTGTATCTTGTGCTGACATTCTTGCTCTTGCCGCCCGTGACTCTGTAGTTTTGACAAGTGGACTACGTTGGTCAGTGCCCACAGGACGAAGAGATGGCACAATTTCTTTGGCTTCTGAAGCTAACAACTTGCCTGGATTTACAGATTCAATTGACGTTCAAAAGCAAAAATTTAGCGACAAAGGTCTCAACAGTCAAGATCTTGTCACTCTTGTGGGTGGACACACAATTGGCACAACACAATGCCAATTTTTCAACTACAGACTCTTCAACTTCACAAACAATGGACCAGATCCAAGCATGGACCCAGCGTTCGTGACTCAGATGCAAGCGCTGTGCCCTCAGAACGGCGACGGTAGCCGCAGGGTTGCATTGGACACAGGCAGCGCCGGGCGGTTCGACACCATGTTCTTCTCAAACTTGAGGAACGGACGTGGGGTTTTGGAGTCTGATCAAAAGCTATGGACCGACGCTTCCACTCGCACTTTTGTCCAACGCTTTCTGGGTTTGAGAGGCGTCTTGGGTTTGACCTTCAATCTTGAGTTTGGGAAATCTATGGTTAAGATGAGTAACATTGAAGTTAAGACTGGAACTCAAGGAGAAATTCGGAAAGTTTGTTCTGCAGTTAACTAA 1044 46.46 MQTSSQTNLSSILNSLIPMTKLRFNPLLVLVVSIAVLFTFCTTLVHGQATRIGFYSNSCPQVESIVASTVRSHFQSDPRIAPGLLRMHFHDCFVRGCDASVLLAGSNSERTAPPNLSLNGFEVIDDAKSQLEAACPGVVSCADILALAARDSVVLTSGLRWSVPTGRRDGTISLASEANNLPGFTDSIDVQKQKFSDKGLNSQDLVTLVGGHTIGTTQCQFFNYRLFNFTNNGPDPSMDPAFVTQMQALCPQNGDGSRRVALDTGSAGRFDTMFFSNLRNGRGVLESDQKLWTDASTRTFVQRFLGLRGVLGLTFNLEFGKSMVKMSNIEVKTGTQGEIRKVCSAVN 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28430584 28432647 + CcPI632755_09g017040.1 Cco09g1704 188161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1704 347 PRINTS Haem peroxidase superfamily signature 81 95 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Haem peroxidase superfamily signature 157 169 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Haem peroxidase superfamily signature 263 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Haem peroxidase superfamily signature 139 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 SUPERFAMILY Heme-dependent peroxidases 51 347 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 ProSiteProfiles Plant heme peroxidase family profile. 49 347 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 ProSitePatterns Peroxidases active site signature. 81 92 IPR019794 GO:0004601(InterPro)
Cco09g1704 347 Pfam Peroxidase 66 304 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 Gene3D - 54 347 - -
Cco09g1704 347 PANTHER PEROXIDASE 25-RELATED 39 343 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco09g1704 347 FunFam Peroxidase 53 195 - -
Cco09g1704 347 CDD secretory_peroxidase 51 346 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 83 103 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 261 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 59 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 277 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 138 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1704 347 Gene3D Peroxidase, domain 2 182 326 - -
Cco09g1704 347 FunFam Peroxidase 182 326 - -
Cco09g1704 347 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1330 Cco-Chr1:21801755 Cco09g1704 Cco-Chr9:28430584 1.10E-68 dispersed
Cco06g1286 Cco-Chr6:23014698 Cco09g1704 Cco-Chr9:28430584 1.60E-104 dispersed
Cco06g1290 Cco-Chr6:23041109 Cco09g1704 Cco-Chr9:28430584 3.40E-106 dispersed
Cco09g1651 Cco-Chr9:26979969 Cco09g1704 Cco-Chr9:28430584 1.10E-76 dispersed
Cco09g1704 Cco-Chr9:28430584 Cco11g0594 Cco-Chr11:6349590 1.90E-63 dispersed
Cco09g1704 Cco-Chr9:28430584 Cco09g1705 Cco-Chr9:28469272 6.10E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1704 K00430 - csv:101217567 572.392