Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1705 ATGGCGAAAGTTGGTTTCATTTTAGTTGTATATGTGGAGGTGTTGCTTAGCTTGGCCGCCACCGCCGTGCATGGCCAAGGCACACGCTTCGATTTTTATCGCGACACATGCCCTGAAGTCGAATTCATCGTTCGATCCACCGTTCGATCCCATTTTCGATTGGATCCCTCAATTGCTCCTGGGTTATTGAGAATGCACTCACATGACTGCTTTGTTCGAGGATGTGATGCTTCTGTACTTCTTTCCAGTCCCAATTCTGAAAGGACGGCTGTGCCTAACCGTACTTTGAAAGGGTTTGAGGTTATTGACGATGCCAAGTCACAACTTGAGGATGTCTGCCCGGGAGTCGTGTCGTGCGCTGATATTCTTGCTCTTGCTGCTCGTGACTCGGTGGTATTGACGGGTGGATTAGGTTGGGAAGTTCCGACGGGACGAAGAGATGGTAGAGTTTCATTGGTTTCAGAGGTGAAGTTGCCTGGTTTTTCAGATTCCATTGAAGTTCAGAAGGAGAAGTTTATGTCTATGGGTCTCAATACACATGACCTCGTCACTCTCGCAGGTGCCCATACCATCGGTACGGCGTCATGTCGTTTTTTCAGTTACAGACTCTACAACTTCACCACGGTGACTGAAAGCGGCGCTGATCCGACCCTTAACCCGTCGCTTGTCGGTCGGCTACGAGAACTTTGCCCTGAAGACGGAGATGGCTCAAACAGAGTCAAACTCGACATGGATAGTCCCGAACAATTCGACTTGTCGTTCTACAAAAACTTGAGACATGGAGGAGGGATCTTGGAGTCTGATCAAATGCTGTGGAATGATGACTCCACTCGCCCTATCGTCCGACATTACTTGGGTATGAGAACTTTAAGAGGGCGTTCTAGCTTTAGAGTTGAGTTTGGAAGATCCATGGTTAAAATGAGCAATGCACAAGTTAAAACTGGCATTGTTGGTGAAATTCGAAGGGTTTGCTCTGAGGTTAATTGA 987 47.72 MAKVGFILVVYVEVLLSLAATAVHGQGTRFDFYRDTCPEVEFIVRSTVRSHFRLDPSIAPGLLRMHSHDCFVRGCDASVLLSSPNSERTAVPNRTLKGFEVIDDAKSQLEDVCPGVVSCADILALAARDSVVLTGGLGWEVPTGRRDGRVSLVSEVKLPGFSDSIEVQKEKFMSMGLNTHDLVTLAGAHTIGTASCRFFSYRLYNFTTVTESGADPTLNPSLVGRLRELCPEDGDGSNRVKLDMDSPEQFDLSFYKNLRHGGGILESDQMLWNDDSTRPIVRHYLGMRTLRGRSSFRVEFGRSMVKMSNAQVKTGIVGEIRRVCSEVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28469272 28471447 - CcPI632755_09g017050.1 Cco09g1705 188162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1705 328 FunFam Peroxidase 159 307 - -
Cco09g1705 328 SUPERFAMILY Heme-dependent peroxidases 29 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 Gene3D Peroxidase, domain 2 159 307 - -
Cco09g1705 328 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PANTHER PEROXIDASE 25-RELATED 19 324 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco09g1705 328 FunFam Peroxidase 31 172 - -
Cco09g1705 328 ProSiteProfiles Plant heme peroxidase family profile. 27 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 CDD secretory_peroxidase 29 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco09g1705 328 Pfam Peroxidase 44 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 Gene3D - 31 328 - -
Cco09g1705 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cco09g1705 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1705 328 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1705 Cco-Chr9:28469272 Cco02g2522 Cco-Chr2:37558035 4.10E-63 dispersed
Cco09g1704 Cco-Chr9:28430584 Cco09g1705 Cco-Chr9:28469272 6.10E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1705 K00430 - csv:101202985 577.785