Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1722 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGATAGACCATCGAGTGGGTCGCTTTTTCTTTTTGATCGTAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCTAGTCCAACTAGCACTTTGACATCTTTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGACGCTGATCAATCAAAATTTTTTTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGTTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAACTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTTTCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGCTGTTACCGACATATATACTGTTGGTTCACCGAAAGAATTATGTATGCATTTGCGATTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTGTTCATTGGGCAGCATCCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGCGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTAATGGCACCACCTACCAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAATGCGATGACATGATTGATATTGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3306 42.8 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFFFPHSSSNNLDAWSSVPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQFPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVAVTDIYTVGSPKELCMHLRFERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTAVHWAASCGRELTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGAADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIECDDMIDIDTLLDDDALMSMTFD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29012041 29029440 + CcPI632755_09g017220.1 Cco09g1722 188179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1722 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco09g1722 1101 ProSiteProfiles IQ motif profile. 925 953 - -
Cco09g1722 1101 Gene3D Immunoglobulins 500 595 IPR013783 -
Cco09g1722 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 MobiDBLite consensus disorder prediction 146 188 - -
Cco09g1722 1101 Gene3D - 668 870 IPR036770 -
Cco09g1722 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 974 IPR027417 -
Cco09g1722 1101 Gene3D - 924 971 - -
Cco09g1722 1101 ProSiteProfiles IQ motif profile. 947 971 - -
Cco09g1722 1101 Pfam Ankyrin repeats (3 copies) 714 803 IPR002110 GO:0005515(InterPro)
Cco09g1722 1101 SUPERFAMILY E set domains 507 591 IPR014756 -
Cco09g1722 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 SUPERFAMILY Ankyrin repeat 688 803 IPR036770 -
Cco09g1722 1101 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 Pfam IPT/TIG domain 506 579 IPR002909 -
Cco09g1722 1101 FunFam Calmodulin-binding transcription activator 2 500 595 - -
Cco09g1722 1101 SMART iq_5 946 968 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 SMART iq_5 923 945 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 FunFam Calmodulin-binding transcription activator 2 923 971 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1722 K21596 - - csv:101203707 1933.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1722 Cco-Chr9:29012041 Cco10g0854 Cco-Chr10:17912168 1.00E-195 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g1722 . 1 1101 CAMTA Transcription Factor Family AT5G64220 53.8 2.5e-276 948.7
Cco06g0217 . 6 942 CAMTA Transcription Factor Family AT1G67310 51.7 1.5e-252 869.8
Cco06g0469 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.9e-258 889.0
Cco06g0469 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.5 4.9e-191 665.2
Cco09g1722 . 1 1101 CAMTA Transcription Factor Family AT5G64220 53.8 2.5e-276 948.7
Cco06g0217 . 6 942 CAMTA Transcription Factor Family AT1G67310 51.7 1.5e-252 869.8
Cco06g0469 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.5 4.9e-191 665.2
Cco06g0469 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.9e-258 889.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59984 PF03859 CG-1 5.40E-51 No_clan Cco TF