Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1722 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGATAGACCATCGAGTGGGTCGCTTTTTCTTTTTGATCGTAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCTAGTCCAACTAGCACTTTGACATCTTTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGACGCTGATCAATCAAAATTTTTTTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGTTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAACTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTTTCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGCTGTTACCGACATATATACTGTTGGTTCACCGAAAGAATTATGTATGCATTTGCGATTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTGTTCATTGGGCAGCATCCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGCGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTAATGGCACCACCTACCAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAATGCGATGACATGATTGATATTGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3306 42.8 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFFFPHSSSNNLDAWSSVPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQFPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVAVTDIYTVGSPKELCMHLRFERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTAVHWAASCGRELTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGAADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIECDDMIDIDTLLDDDALMSMTFD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29012041 29029440 + CcPI632755_09g017220.1 Cco09g1722 188179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1722 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco09g1722 1101 ProSiteProfiles IQ motif profile. 925 953 - -
Cco09g1722 1101 Gene3D Immunoglobulins 500 595 IPR013783 -
Cco09g1722 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 MobiDBLite consensus disorder prediction 146 188 - -
Cco09g1722 1101 Gene3D - 668 870 IPR036770 -
Cco09g1722 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 974 IPR027417 -
Cco09g1722 1101 Gene3D - 924 971 - -
Cco09g1722 1101 ProSiteProfiles IQ motif profile. 947 971 - -
Cco09g1722 1101 Pfam Ankyrin repeats (3 copies) 714 803 IPR002110 GO:0005515(InterPro)
Cco09g1722 1101 SUPERFAMILY E set domains 507 591 IPR014756 -
Cco09g1722 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 SUPERFAMILY Ankyrin repeat 688 803 IPR036770 -
Cco09g1722 1101 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cco09g1722 1101 Pfam IPT/TIG domain 506 579 IPR002909 -
Cco09g1722 1101 FunFam Calmodulin-binding transcription activator 2 500 595 - -
Cco09g1722 1101 SMART iq_5 946 968 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 SMART iq_5 923 945 IPR000048 GO:0005515(InterPro)
Cco09g1722 1101 FunFam Calmodulin-binding transcription activator 2 923 971 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1722 Cco-Chr9:29012041 Cco10g0854 Cco-Chr10:17912168 1.00E-195 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59984 PF03859 CG-1 5.40E-51 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1722 K21596 - csv:101203707 1933.3