Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g1752 | ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGGTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCACTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTGAGAGGTGGTATACCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTTCCATTCTGGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGACTGA | 714 | 47.06 | MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVTGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYTCRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGD | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 29692358 | 29698912 | + | CcPI632755_09g017520.1 | Cco09g1752 | 188209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g1752 | 237 | Gene3D | - | 142 | 198 | - | - | |
| Cco09g1752 | 237 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 237 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Cco09g1752 | 237 | SUPERFAMILY | Nucleic acid-binding proteins | 36 | 237 | IPR012340 | - | |
| Cco09g1752 | 237 | Pfam | MCM OB domain | 117 | 237 | IPR033762 | - | |
| Cco09g1752 | 237 | Gene3D | - | 117 | 237 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g1752 | Cco-Chr9:29692358 | Cco04g2395 | Cco-Chr4:37287667 | 5.60E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g1752 | K10738 | - | csv:101205171 | 436.417 |