Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1753 ATGGAAAAGATTATCAGGGACATTATATGGACTAGTGGTGTGCACAAGCCAAGTCATAACCTTGTCGAGTGGGAGTGGACCACTCTTCCTACTTCTCTTGGGGTTTGGGTGTTGGAGCTCTTAGCCACCATAATACCTCCTTGCTTACTTGATGACTTTGGAGATTCACTCAAGAAAGATCTCCCCTGTGGAAGAAATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTCCAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTAGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCTAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGATATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTGCGAACAAGAAAAGGGAAAGCATGACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGATGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTGCCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAAACTCAAATCGATGGACGAATAG 1446 42.74 MEKIIRDIIWTSGVHKPSHNLVEWEWTTLPTSLGVWVLELLATIIPPCLLDDFGDSLKKDLPCGRNDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECEQEKGKHDNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMMTSALVDSVGNALHSNFAENPDEEYAKQEILILEKLKSMDE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29705669 29719818 + CcPI632755_09g017530.1 Cco09g1753 188210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1753 481 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 66 469 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cco09g1753 481 CDD MCM9 135 439 - -
Cco09g1753 481 PRINTS Mini-chromosome maintenance (MCM) protein family signature 173 188 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 PRINTS Mini-chromosome maintenance (MCM) protein family signature 259 272 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 PRINTS Mini-chromosome maintenance (MCM) protein family signature 282 294 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 PRINTS Mini-chromosome maintenance (MCM) protein family signature 309 317 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 PRINTS Mini-chromosome maintenance (MCM) protein family signature 231 245 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 ProSiteProfiles MCM family domain profile. 132 335 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 SMART mcm 1 441 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 Pfam MCM P-loop domain 134 337 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco09g1753 481 FunFam Probable DNA helicase MCM9 110 444 - -
Cco09g1753 481 Gene3D - 114 445 IPR027417 -
Cco09g1753 481 SMART AAA_5 174 323 IPR003593 GO:0016887(InterPro)
Cco09g1753 481 Pfam MCM AAA-lid domain 358 439 IPR041562 -
Cco09g1753 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 444 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1753 Cco-Chr9:29705669 Cco11g0380 Cco-Chr11:3789584 4.10E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1753 K10738 - csv:101205171 790.801