Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1764 ATGGCATCTTGGAATCGTGATGAAGGCGAGGCATTGCTTATGGAGAAACTTATGGAAACGAGGACAATGTATTTGGTGGATGTAGTTGTTTTTGGAGTGCAAGAATCAATGTCCTGCCGCAGCCACCCATTAAGAAAACCCACTCCGGCGTTTCTCCGTTCTGGTAGCAGCTCCGGCACTCACCCACCGGCGAACTCCCAGTGTCGACCCTCACACAACGGTTCTAAGAACGTTCATCCTTGCACAAATATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCACCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCAGCCTCCGAAATTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGAAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGGAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTGAAACTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTCCTGGATCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTATCTGTATCTCCTAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTAAGGAGGCCTTAGAAGATGATAGTGTTAGAAAAACTCTACAGATGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCATGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGGGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGGAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCATGGTCTCAGAGACGGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTTGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGACCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTCTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTAGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCACAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCGTCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTTTAAACTCTTCCGAAATCAAGGGTAGATTGACGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCACTAATTTGCAGAGAATCAGCTTTATTTGCCCTTGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTATCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCTTCAAATGAGCAGCAACAAATTGGCTGCTGGTTGCTTACACGTTATCTTGAAGGAATTGTTTGTCATGGAACTTAATCAAGAAAAAGGTAGTCTTGTACTGGGTCTGGAATGGATGAAATGGCATTTACAAATTATGGGCTGGGATGATTTCATTCACCAAGTGCATTGCATATATCCTGCTTCGGAGGTGGTGGGACAGAGGTTCCATAGGACCAAGCATTGTCGCTTTCTTTGGAGTCTTATGAAATGCCTGAGAGAATGTGTGTTGTTACTAATGTGGAGGAGAGGTCTTGGAGGTAATTTGCTGAACCTGGAGTTCAAGGCTAAAGACACTAGAGATTAA 3702 42.0 MASWNRDEGEALLMEKLMETRTMYLVDVVVFGVQESMSCRSHPLRKPTPAFLRSGSSSGTHPPANSQCRPSHNGSKNVHPCTNMPSKGKKNPKTLSRLSNSTHSPSPVPRLTIPPASEICEDEFLSSIEEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHGAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPETGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLDLSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCARSLKEALEDDSVRKTLQMIASNELYKRCLLHGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSGSDDHFQHFSSNEYVDYAFNIDQLTKVFINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLTVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWLQMSSNKLAAGCLHVILKELFVMELNQEKGSLVLGLEWMKWHLQIMGWDDFIHQVHCIYPASEVVGQRFHRTKHCRFLWSLMKCLRECVLLLMWRRGLGGNLLNLEFKAKDTRD 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29951432 29971875 - CcPI632755_09g017640.1 Cco09g1764 188221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1764 1233 FunFam spermatogenesis-associated protein 5-like protein 1 1006 1089 - -
Cco09g1764 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 707 IPR027417 -
Cco09g1764 1233 Gene3D - 653 833 - -
Cco09g1764 1233 Pfam AAA+ lid domain 676 716 IPR041569 -
Cco09g1764 1233 Pfam AAA+ lid domain 1027 1072 IPR041569 -
Cco09g1764 1233 MobiDBLite consensus disorder prediction 40 114 - -
Cco09g1764 1233 ProSiteProfiles Plant heme peroxidase family profile. 522 850 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1764 1233 MobiDBLite consensus disorder prediction 51 107 - -
Cco09g1764 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1080 IPR027417 -
Cco09g1764 1233 FunFam calmodulin-interacting protein 111 isoform X1 830 1005 - -
Cco09g1764 1233 Gene3D - 469 651 IPR027417 -
Cco09g1764 1233 SMART AAA_5 869 1007 IPR003593 GO:0016887(InterPro)
Cco09g1764 1233 SMART AAA_5 518 654 IPR003593 GO:0016887(InterPro)
Cco09g1764 1233 CDD RecA-like_CDC48_r2-like 844 1003 - -
Cco09g1764 1233 ProSitePatterns AAA-protein family signature. 975 993 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco09g1764 1233 Gene3D - 834 1077 IPR027417 -
Cco09g1764 1233 Pfam ATPase family associated with various cellular activities (AAA) 873 1004 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco09g1764 1233 Pfam ATPase family associated with various cellular activities (AAA) 522 651 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco09g1764 1233 FunFam Putative vesicular transport protein (CDC48) 473 651 - -
Cco09g1764 1233 Coils Coil 1054 1074 - -
Cco09g1764 1233 PANTHER AAA-FAMILY ATPASE 158 1094 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Cco09g1764 1233 CDD RecA-like_CDC48_NLV2_r1-like 487 650 - -
Cco09g1764 1233 Gene3D - 1006 1076 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1018 Cco-Chr3:16113935 Cco09g1764 Cco-Chr9:29951432 2.00E-11 dispersed
Cco09g0591 Cco-Chr9:5239422 Cco09g1764 Cco-Chr9:29951432 2.80E-56 dispersed
Cco09g1764 Cco-Chr9:29951432 Cco10g2002 Cco-Chr10:33548803 3.90E-119 dispersed
Cco09g1764 Cco-Chr9:29951432 Cco04g1128 Cco-Chr4:26676622 6.10E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1764 - - - 0.0